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The map label for this gene is yjbJ [H]

Identifier: 110679402

GI number: 110679402

Start: 2025481

End: 2026308

Strand: Direct

Name: yjbJ [H]

Synonym: RD1_2127

Alternate gene names: 110679402

Gene position: 2025481-2026308 (Clockwise)

Preceding gene: 110679400

Following gene: 110679409

Centisome position: 49.01

GC content: 62.08

Gene sequence:

>828_bases
ATGCGCATTCGTTTCCCACTGCCATTTTTGGCGGCGTTATTCATGGGCTGTGTTGCAGCGGCTGACACCCCTGCGGCTTT
CCCTGACTTCAGTGCCAAGCGCATCGGTGTGCCCAAAGCCGGTGAAAGACCCCGGATCGTGCAGATTGATCCCGAAGAAC
AAGCGCGCTTGCTGGCCCGTGTTGCCCAGCCGCCAGCCCTGCGGGACGTGGTCCTTCTGGAAGATTTGCAAATCGGGGCC
TACAGTTGGTTCTGGTCGCGCATTTCCCCGCAACTGCGCGATTCCGGTCCGGGGCGATTGCACGAAGCGATCAGTGTGAT
GGGCCGTGAAGGCAGCATTGCACAGCCGAGATTGCAGCATCTGCAGGAAATCGCGCGTCACAACAGCGCCACAATTCTGC
GCGCGACCGTGGGGACGCGTGTGTCGCCCGCTCTCGTGCTGGCGGTGATTTCGGTGGAATCTGCCGGCAATCCGGGAGCG
GTTAGCAAGGCAGGCGCCGCAGGTCTGATGCAGCTGATGCCCGCCACGGCAGAACGCTTCGGGGTCGAGGATCCATTGTC
AGCGCAGCAGAACATCCAAGGCGGCGTGCGCTACCTCGACTGGCTGATGGAGAGGTTTGATGGCGACCCGATCATGGTGC
TTGCCGGGTATAACGCGGGCGAGGGGGCTGTGGCCAAACATGACGGCGTGCCACCGTTTCCCGAAACGCGCGACTATGTG
CCCAAGGTTCTTGCGGCGTTTCAGGTGGCAAGGGGCTTATGCCTCACCCCGCCCGAACTCGTGTCGGACGGATGTGTTTT
TGCCGGGCTGAACGAGCGCGGCGGATGA

Upstream 100 bases:

>100_bases
GGCAAAATCGCCGTGATCTGAGCCTCGATTTCTGGTCAGGGGCTGCCTGATCTGAAATACTTCCCCCAAAACAAGACCAA
GAATACCGAGAGCAGAGATC

Downstream 100 bases:

>100_bases
GGTGCCCGAGGTAGCACGTATCGTGCAACGCGACGGCCTGCCTCAAAGCGGTATCAGACGATTGTCGCCTCGGTCGCGGC
GCGCAGGTCTTCTTCGCTGA

Product: Slt family transglycosylase

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MRIRFPLPFLAALFMGCVAAADTPAAFPDFSAKRIGVPKAGERPRIVQIDPEEQARLLARVAQPPALRDVVLLEDLQIGA
YSWFWSRISPQLRDSGPGRLHEAISVMGREGSIAQPRLQHLQEIARHNSATILRATVGTRVSPALVLAVISVESAGNPGA
VSKAGAAGLMQLMPATAERFGVEDPLSAQQNIQGGVRYLDWLMERFDGDPIMVLAGYNAGEGAVAKHDGVPPFPETRDYV
PKVLAAFQVARGLCLTPPELVSDGCVFAGLNERGG

Sequences:

>Translated_275_residues
MRIRFPLPFLAALFMGCVAAADTPAAFPDFSAKRIGVPKAGERPRIVQIDPEEQARLLARVAQPPALRDVVLLEDLQIGA
YSWFWSRISPQLRDSGPGRLHEAISVMGREGSIAQPRLQHLQEIARHNSATILRATVGTRVSPALVLAVISVESAGNPGA
VSKAGAAGLMQLMPATAERFGVEDPLSAQQNIQGGVRYLDWLMERFDGDPIMVLAGYNAGEGAVAKHDGVPPFPETRDYV
PKVLAAFQVARGLCLTPPELVSDGCVFAGLNERGG
>Mature_275_residues
MRIRFPLPFLAALFMGCVAAADTPAAFPDFSAKRIGVPKAGERPRIVQIDPEEQARLLARVAQPPALRDVVLLEDLQIGA
YSWFWSRISPQLRDSGPGRLHEAISVMGREGSIAQPRLQHLQEIARHNSATILRATVGTRVSPALVLAVISVESAGNPGA
VSKAGAAGLMQLMPATAERFGVEDPLSAQQNIQGGVRYLDWLMERFDGDPIMVLAGYNAGEGAVAKHDGVPPFPETRDYV
PKVLAAFQVARGLCLTPPELVSDGCVFAGLNERGG

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=179, Percent_Identity=32.9608938547486, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 29451; Mature: 29451

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRFPLPFLAALFMGCVAAADTPAAFPDFSAKRIGVPKAGERPRIVQIDPEEQARLLAR
CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
VAQPPALRDVVLLEDLQIGAYSWFWSRISPQLRDSGPGRLHEAISVMGREGSIAQPRLQH
HCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCHHHHH
LQEIARHNSATILRATVGTRVSPALVLAVISVESAGNPGAVSKAGAAGLMQLMPATAERF
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GVEDPLSAQQNIQGGVRYLDWLMERFDGDPIMVLAGYNAGEGAVAKHDGVPPFPETRDYV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
PKVLAAFQVARGLCLTPPELVSDGCVFAGLNERGG
HHHHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCC
>Mature Secondary Structure
MRIRFPLPFLAALFMGCVAAADTPAAFPDFSAKRIGVPKAGERPRIVQIDPEEQARLLAR
CEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
VAQPPALRDVVLLEDLQIGAYSWFWSRISPQLRDSGPGRLHEAISVMGREGSIAQPRLQH
HCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCCCCCHHHHH
LQEIARHNSATILRATVGTRVSPALVLAVISVESAGNPGAVSKAGAAGLMQLMPATAERF
HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
GVEDPLSAQQNIQGGVRYLDWLMERFDGDPIMVLAGYNAGEGAVAKHDGVPPFPETRDYV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
PKVLAAFQVARGLCLTPPELVSDGCVFAGLNERGG
HHHHHHHHHHCCCCCCCHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]