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The map label for this gene is hofQ [C]

Identifier: 110679396

GI number: 110679396

Start: 2021931

End: 2023322

Strand: Reverse

Name: hofQ [C]

Synonym: RD1_2120

Alternate gene names: 110679396

Gene position: 2023322-2021931 (Counterclockwise)

Preceding gene: 110679398

Following gene: 110679395

Centisome position: 48.95

GC content: 58.26

Gene sequence:

>1392_bases
ATGAAAACCAATGGAATATTGAAAGCAGCCCTTCTCGGGCTGGCGATCAGCGTGAGTCCTATTGCCTTTACGGCACCTTT
GAGCGCGCAGGCCGAAGCCCTGCGGATCATTGCAAGAGAGACCAGCGAGACGCTGAATGTGTCGCAAAACCGGGCGGTTG
TGGTTGAAAGCGAAATTCCTTTCGCAGAGCTCAGCATCGCAAACCCCGGTATTGCCGATATCTCGTCGCTGTCGGATCGC
AGCATCTATGTGCTTGGCAAGGTGCCGGGCATCACGACGCTGACTCTTCTGGATGCGGCCGGGCAGCTGATCACCAATGT
GGAGGTGCGGGTTGCCCCCGATCTGACCGAGTTCAAGGAACGCCTGCGCCAGATTCTGCCCGGTGAAGCGATCGAAGTGC
GCACCGCCAATGACGGCATCGTTCTGTCGGGACAGGTATCGAGCAGCCAACGGCTGTCAAAAGCGCTTGAACTGGCAGCG
CGCTATGCACCGGATCGGGTTTCAAACCTGATGACGGTAGGCGGTGTGCAGCAGGTGATGCTTAAGGTGCGTTTTGCCGA
GATGAGCCGCGGTGTTTCCAAACAATTGCAAAGTTCCTTGCGGATCGGCGGCAGCGACGCTCAGGCAGGGATCGGGCGCG
GCATCGGCGGCATTCCGAACCTCGCCGCAGATTCAGCGCAGGGCGCGGTGTTCTTTGACTTCGGCCTTGGATCGACGCAG
GTACAACTGTTGTTGGAAGCGCTGGAAACCAAGGGGGCCGTGCGCACACTGGCCGAACCCAATCTTGTGTCGCTTTCCGG
GCAAGAGGCGAATTTCCTTGCAGGTGGCGAATACCCCGTCCCGGTGCAAAGCGAAGATGGCATCAGCGTTGATTTCAAAC
CTTTCGGGATCGAATTGAACTTTGTCCCCCGCGTTGTGGACGGCGATCTGATCAACCTGCAACTCTCGGCGGCAACCTCG
TCGATTGACCCCTCAAACGGGATCAGCGTCGGTGACGGTTTCACCGTGGATGCGTTTATCCGCCGCGAAGCGTCAACCAC
GGTCGAGATGCGCGATGGTGAAAGCTTTGCGATTGCCGGGCTGCTTGAGGACAATTTTAACGACAACATCACACAGGTGC
CCTGGATCAGCGATGTGCCGATCCTTGGCGCCCTGTTCCGCAGCACGGATTACATGCGCAACCAGACCGAACTGGTGATA
ATCATAACCGCGCATCTGGTGACCCCGACCCGTGGCGAAGCCCTTGCCTTGCCCACGGACCGGATCAGGCCACCAAGCGA
AAAGGATCTGTTCCTGAACGGGCGCACGATCGAAACCCTGAATGCGCGCGGTTCTGCGGGCGAAGTGGCCAAGCAAGACT
TCAGCGGGTCTTATGGCTACGTGATGGATTGA

Upstream 100 bases:

>100_bases
AACCCGTTGATTCTTGCAAAAAAACCAAAACCTGCGCAGAGTGTCTCAAAGACGGGCGAAAAGACCCGAAACCGAGGCGT
GATCAAAAAAGGCAGGTCAC

Downstream 100 bases:

>100_bases
TCAGATGGTTGTTTCTCTCACCACACCCGCACGTGCTTTTCTCATTCTGACCGGGCTGGCTGCGCTCACCGCCTGCGCCC
CGGACACAGGGGTCGGTCAA

Product: type II/III secretion system protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MKTNGILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDR
SIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAA
RYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFDFGLGSTQ
VQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPVQSEDGISVDFKPFGIELNFVPRVVDGDLINLQLSAATS
SIDPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVI
IITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVMD

Sequences:

>Translated_463_residues
MKTNGILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDR
SIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAA
RYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFDFGLGSTQ
VQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPVQSEDGISVDFKPFGIELNFVPRVVDGDLINLQLSAATS
SIDPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVI
IITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVMD
>Mature_463_residues
MKTNGILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDR
SIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAA
RYAPDRVSNLMTVGGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFDFGLGSTQ
VQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPVQSEDGISVDFKPFGIELNFVPRVVDGDLINLQLSAATS
SIDPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVI
IITAHLVTPTRGEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVMD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=243, Percent_Identity=30.4526748971193, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082242, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 49159; Mature: 49159

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNGILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIP
CCCCHHHHHHHHHHHEEECCEEEECCCCHHHHHHHHHHHHCHHHCCCCCCCEEEEECCCC
FAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKE
EEEEEECCCCCHHHHCCCCCEEEEEECCCCCEEEHHHHHCCHHHCCEEEEECCCHHHHHH
RLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARYAPDRVSNLMTVGGVQQVM
HHHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
LKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFDFGLGSTQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH
VQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPVQSEDGISVDFKPFGIELN
HHHHHHHHHCCCHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEE
FVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAG
EECEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHEEECCCCCEEEEECCCEEEEEE
LLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTD
EEECCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCHH
RIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVMD
CCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHCCCCCCEEEC
>Mature Secondary Structure
MKTNGILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIP
CCCCHHHHHHHHHHHEEECCEEEECCCCHHHHHHHHHHHHCHHHCCCCCCCEEEEECCCC
FAELSIANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKE
EEEEEECCCCCHHHHCCCCCEEEEEECCCCCEEEHHHHHCCHHHCCEEEEECCCHHHHHH
RLRQILPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARYAPDRVSNLMTVGGVQQVM
HHHHHCCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHH
LKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFDFGLGSTQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH
VQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPVQSEDGISVDFKPFGIELN
HHHHHHHHHCCCHHHHHCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEE
FVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMRDGESFAIAG
EECEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHEEECCCCCEEEEECCCEEEEEE
LLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTD
EEECCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCHH
RIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVMD
CCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]