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The map label for this gene is pal [H]

Identifier: 110679377

GI number: 110679377

Start: 2001942

End: 2002454

Strand: Direct

Name: pal [H]

Synonym: RD1_2098

Alternate gene names: 110679377

Gene position: 2001942-2002454 (Clockwise)

Preceding gene: 110679376

Following gene: 110679378

Centisome position: 48.44

GC content: 60.43

Gene sequence:

>513_bases
ATGAAACTTACACGGAATATTCTTTTACTGGTGGCGGGGCTGGCGCTGGCCGCCTGTACCGATCCGGGCCGTTTTGGCAG
TGACGGCACCGGGGCTGGTGGCCTTGGCGGTGGTGCGGTTGTGCCCGGCAGCGCCAATGATCCAAACTCTCCTGCGTTTT
TCAATCAGACCGTGGGGGACAGGGTGCTGTTTGCAGTGGATGAATCCTCGATCAATCCGGCCGGGCAAACCACATTGGAA
GGTCAGGCGCAGTGGCTGCTGGCAAACACCGATTACACGGCGGTGATCGAAGGGCACGCGGATGAACAGGGTACGCGCGA
ATACAACGTCGCCCTGGGCGCGCGGCGCGCGAATGCGGTGCGCGAATATCTGATTTCGCGCGGGGTTGCGGGCAACCGGT
TGCAGACTGTCAGCTATGGCAAGGAACGCCCGATTGAGATTTGCAGCAGCGAAGAGTGTTATGCGAAAAACCGCCGGGCT
GTAACGGTTCTGGCCAGTGGCCTGTCCGGTTGA

Upstream 100 bases:

>100_bases
TGCAGAGATAACGGTGCGCGCGAAACAATTTCTATTGGCGGCGCGCATCTGGTAAAATATCAGGCATAGAAATATAATCT
GACCGAATGAGGCAAAGAGC

Downstream 100 bases:

>100_bases
TCCGATGCGCTTTTTCGTGATCTGTGCCGCAGCTTTGTTGCTTGCGCCCCTGCCGGCAGCGGCACAGGATGATCAGACCC
TTGCCGACATCCGGCAGGAA

Product: peptidoglycan-associated lipoprotein, putative

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKLTRNILLLVAGLALAACTDPGRFGSDGTGAGGLGGGAVVPGSANDPNSPAFFNQTVGDRVLFAVDESSINPAGQTTLE
GQAQWLLANTDYTAVIEGHADEQGTREYNVALGARRANAVREYLISRGVAGNRLQTVSYGKERPIEICSSEECYAKNRRA
VTVLASGLSG

Sequences:

>Translated_170_residues
MKLTRNILLLVAGLALAACTDPGRFGSDGTGAGGLGGGAVVPGSANDPNSPAFFNQTVGDRVLFAVDESSINPAGQTTLE
GQAQWLLANTDYTAVIEGHADEQGTREYNVALGARRANAVREYLISRGVAGNRLQTVSYGKERPIEICSSEECYAKNRRA
VTVLASGLSG
>Mature_170_residues
MKLTRNILLLVAGLALAACTDPGRFGSDGTGAGGLGGGAVVPGSANDPNSPAFFNQTVGDRVLFAVDESSINPAGQTTLE
GQAQWLLANTDYTAVIEGHADEQGTREYNVALGARRANAVREYLISRGVAGNRLQTVSYGKERPIEICSSEECYAKNRRA
VTVLASGLSG

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=168, Percent_Identity=36.3095238095238, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17702; Mature: 17702

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTRNILLLVAGLALAACTDPGRFGSDGTGAGGLGGGAVVPGSANDPNSPAFFNQTVGD
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCC
RVLFAVDESSINPAGQTTLEGQAQWLLANTDYTAVIEGHADEQGTREYNVALGARRANAV
EEEEEECCCCCCCCCCCEECCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCHHHHHH
REYLISRGVAGNRLQTVSYGKERPIEICSSEECYAKNRRAVTVLASGLSG
HHHHHHCCCCCCEEEEECCCCCCCEEECCCCCHHHCCCEEEEEEECCCCC
>Mature Secondary Structure
MKLTRNILLLVAGLALAACTDPGRFGSDGTGAGGLGGGAVVPGSANDPNSPAFFNQTVGD
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCC
RVLFAVDESSINPAGQTTLEGQAQWLLANTDYTAVIEGHADEQGTREYNVALGARRANAV
EEEEEECCCCCCCCCCCEECCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCHHHHHH
REYLISRGVAGNRLQTVSYGKERPIEICSSEECYAKNRRAVTVLASGLSG
HHHHHHCCCCCCEEEEECCCCCCCEEECCCCCHHHCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]