Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 110679325

GI number: 110679325

Start: 1952733

End: 1953800

Strand: Reverse

Name: perM [C]

Synonym: RD1_2044

Alternate gene names: 110679325

Gene position: 1953800-1952733 (Counterclockwise)

Preceding gene: 110679331

Following gene: 110679324

Centisome position: 47.27

GC content: 59.18

Gene sequence:

>1068_bases
ATGGCCCTGCCCATCCGGGATCAGTTGAAATATTGGGGAATTGCCACCGCGGTGCTGTTGGTTGCGCTGATGTTCTTGGG
CGATGTGCTCTTGCCCTTTGTTCTTGGCGGCGCAATCGCCTATTTTCTGGACCCTGTGGCAGATCGCCTCGAACGCCTCG
GCCTGAGCCGGGTCGCCGCGACCGCGATCATTACGCTTTGCGGCTTGTTGGTTTTCTTTATTGTCGCGCTGCTCGTGATT
CCTGCCCTCGTCGAACAGGCTGTAAAGCTGGTCAATGTCGCGCCGGAATATGCACGCAATATCACCGCCTTTTTGACAGA
ACGCTTCCCAACGCTGCTGGATGAAAATTCTGCCATGCAGCGCTCCCTGCATTCGCTGGGTGAGACGATCCAGAGCCGGG
GTGCCGAGTTGTTGGAGACGGCACTGTCTTCTGCGGCGTCACTGTTGAATGTCTTGATCCTCTTGATCATCGTGCCGGTT
GTCGCGGTGTATCTACTGCTGGACTGGGACAATATGACGGCAAAGATCGACAGCCTGCTGCCCCGCGATCATGCCCCGAC
CATCCGCCAGCTTGCGTCCCAGATTGATCAGGTGCTGGCGTCATTTATCCGCGGTATGGGCACCGTCTGCCTGATCCTGG
GGACATATTACGCGATCGCCTTGATGGTTGCGGGGCTGCAGTTCGGGCTTGTGGTCGGGTTCATCGCGGGGCTGGTGACA
TTCATTCCCTACCTCGGGGCCCTGATCGGCGGGGCCTTGGCCATCGGGCTTGCCCTGTTTCAATTCTGGGGCGAGTGGAT
GTCCGTGGGCATCATTGTCGGCATATTCGCGCTGGGTCAGGTGCTTGAGGGCAATGTCATCACGCCCAAACTCGTGGGCA
ATTCCGTCGGGCTGCACCCGGTCTGGCTGCTGCTGGCGCTGTCAGTCTTTGGCGCACTCTTCGGGTTCGTGGGCATGCTC
GTAGCCGTACCGCTCGCCGCGGCCCTCGGGGTTCTGGCGCGCTTTGGCGTTGCGCAATACACAAACTCGCTGCTTTATCG
TGGCATGTCGGACAAGGATCAGGACTGA

Upstream 100 bases:

>100_bases
TTTCGCTCAAACAGGAAATAGGTTTTTGCAGCGCTACACTTCTGCCCAAACCTGCGGTAAGCACGGTGACATCGCGACCA
CAAAGGACAGAGAGAGAAAA

Downstream 100 bases:

>100_bases
CATGCCCGAACAGCTTGGTTTGGACCTGCCCGGCATCACCGCACTGGGGCGGGCGGATTTTCTGGTGGCGCCGTCAAATG
CTCTCGCCGTGGCCCTGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MALPIRDQLKYWGIATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLERLGLSRVAATAIITLCGLLVFFIVALLVI
PALVEQAVKLVNVAPEYARNITAFLTERFPTLLDENSAMQRSLHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPV
VAVYLLLDWDNMTAKIDSLLPRDHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVT
FIPYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHPVWLLLALSVFGALFGFVGML
VAVPLAAALGVLARFGVAQYTNSLLYRGMSDKDQD

Sequences:

>Translated_355_residues
MALPIRDQLKYWGIATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLERLGLSRVAATAIITLCGLLVFFIVALLVI
PALVEQAVKLVNVAPEYARNITAFLTERFPTLLDENSAMQRSLHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPV
VAVYLLLDWDNMTAKIDSLLPRDHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVT
FIPYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHPVWLLLALSVFGALFGFVGML
VAVPLAAALGVLARFGVAQYTNSLLYRGMSDKDQD
>Mature_354_residues
ALPIRDQLKYWGIATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLERLGLSRVAATAIITLCGLLVFFIVALLVIP
ALVEQAVKLVNVAPEYARNITAFLTERFPTLLDENSAMQRSLHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPVV
AVYLLLDWDNMTAKIDSLLPRDHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVTF
IPYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLV
AVPLAAALGVLARFGVAQYTNSLLYRGMSDKDQD

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=326, Percent_Identity=28.5276073619632, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 37908; Mature: 37777

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPIRDQLKYWGIATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLERLGLSRVAA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIITLCGLLVFFIVALLVIPALVEQAVKLVNVAPEYARNITAFLTERFPTLLDENSAMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHH
RSLHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPVVAVYLLLDWDNMTAKIDSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
PRDHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHH
VWLLLALSVFGALFGFVGMLVAVPLAAALGVLARFGVAQYTNSLLYRGMSDKDQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ALPIRDQLKYWGIATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLERLGLSRVAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIITLCGLLVFFIVALLVIPALVEQAVKLVNVAPEYARNITAFLTERFPTLLDENSAMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHH
RSLHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPVVAVYLLLDWDNMTAKIDSLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
PRDHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIPYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHH
VWLLLALSVFGALFGFVGMLVAVPLAAALGVLARFGVAQYTNSLLYRGMSDKDQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]