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The map label for this gene is 110679277

Identifier: 110679277

GI number: 110679277

Start: 1904490

End: 1905179

Strand: Reverse

Name: 110679277

Synonym: RD1_1994

Alternate gene names: NA

Gene position: 1905179-1904490 (Counterclockwise)

Preceding gene: 110679279

Following gene: 110679275

Centisome position: 46.1

GC content: 59.28

Gene sequence:

>690_bases
ATGCAAATCATTTGGCTCGGGCACGGCAGCTTTCGCATCGAAATCGGGGATCAGGTGCTGCTGATTGATCCATGGCTGAC
GGGCAACCCGATGCTGGCCGAGGATCAGCACGCCGCTGCCACCACCGGTGCGACGCATATTCTGATCACCCATGGCCATT
TCGATCACACGGCGGATGTGGTCGCCTTGTCCAAATCGCTGGAGGCACCGGTCGTGGGGATTTACGACTTCATGAGCTAC
TTCGAGGCCAAGGAGGGCCTGAGTGTCGTGGGGTTCAACATGGGCGGCACGGTCACCTTGGGCGATGTGGCGGTGTCACT
GGTCCCTGCCCTGCACTCGACGTCCTACGGTCCGGATGCGACGGCCCCGCTCGGGCGCGAGGCAGGGTTCATCATCAAGG
GCGAACGTTACACGGTCTATGTGTCAGGTGACACAGGGATTTCGGCGGAAATGGATTGGATCGGGGACTATTACAAACCC
GACATCGGCATCCTGAGCGCCGGTGGACATTTCACCATGGACATGAAGGGGGCCGCCTATGCCGCGAAACGGTACTTCGA
CTTCAAAACCGTGATCCCCTGCCACTACAAGACCTTTGATCTGCTGGAGCAATCCGCAACGGACCTCATCGACGCCCTGC
CGGATGTCGATGTGATCGAGCCGCAGGTCATGACGCCGATAAGGTTCTGA

Upstream 100 bases:

>100_bases
ATTTCTGTCTCCCTTGCACCTGAACATGCGGCCAACGACGGTTTTGCCTAAAGCGGCATCCGCGTCTAAGGTCCAAGTAT
TGCAGAGAGGGAGAGGTTCA

Downstream 100 bases:

>100_bases
GCATGGCCTAGCGCCGCGCGGTAAAAAATCCCCTGAGCATCGCCTCGGATTCCGCAGCGGCGATGCCGTCAAATACTTCG
GGTGCATGATGGCATTGCGG

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MQIIWLGHGSFRIEIGDQVLLIDPWLTGNPMLAEDQHAAATTGATHILITHGHFDHTADVVALSKSLEAPVVGIYDFMSY
FEAKEGLSVVGFNMGGTVTLGDVAVSLVPALHSTSYGPDATAPLGREAGFIIKGERYTVYVSGDTGISAEMDWIGDYYKP
DIGILSAGGHFTMDMKGAAYAAKRYFDFKTVIPCHYKTFDLLEQSATDLIDALPDVDVIEPQVMTPIRF

Sequences:

>Translated_229_residues
MQIIWLGHGSFRIEIGDQVLLIDPWLTGNPMLAEDQHAAATTGATHILITHGHFDHTADVVALSKSLEAPVVGIYDFMSY
FEAKEGLSVVGFNMGGTVTLGDVAVSLVPALHSTSYGPDATAPLGREAGFIIKGERYTVYVSGDTGISAEMDWIGDYYKP
DIGILSAGGHFTMDMKGAAYAAKRYFDFKTVIPCHYKTFDLLEQSATDLIDALPDVDVIEPQVMTPIRF
>Mature_229_residues
MQIIWLGHGSFRIEIGDQVLLIDPWLTGNPMLAEDQHAAATTGATHILITHGHFDHTADVVALSKSLEAPVVGIYDFMSY
FEAKEGLSVVGFNMGGTVTLGDVAVSLVPALHSTSYGPDATAPLGREAGFIIKGERYTVYVSGDTGISAEMDWIGDYYKP
DIGILSAGGHFTMDMKGAAYAAKRYFDFKTVIPCHYKTFDLLEQSATDLIDALPDVDVIEPQVMTPIRF

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1994_ROSDO (Q168J5)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682284.1
- ProteinModelPortal:   Q168J5
- STRING:   Q168J5
- GeneID:   4196740
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1994
- NMPDR:   fig|375451.6.peg.1863
- eggNOG:   COG2220
- HOGENOM:   HBG741314
- OMA:   FPIIDQT
- ProtClustDB:   CLSK934011
- BioCyc:   RDEN375451:RD1_1994-MONOMER
- HAMAP:   MF_00457
- InterPro:   IPR001279
- InterPro:   IPR022877
- SMART:   SM00849

Pfam domain/function: PF00753 Lactamase_B

EC number: NA

Molecular weight: Translated: 24835; Mature: 24835

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIWLGHGSFRIEIGDQVLLIDPWLTGNPMLAEDQHAAATTGATHILITHGHFDHTADV
CEEEEEECCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
VALSKSLEAPVVGIYDFMSYFEAKEGLSVVGFNMGGTVTLGDVAVSLVPALHSTSYGPDA
HHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCC
TAPLGREAGFIIKGERYTVYVSGDTGISAEMDWIGDYYKPDIGILSAGGHFTMDMKGAAY
CCCCCCCCCEEEECCEEEEEEECCCCCCEEHHHCCCCCCCCCEEEECCCEEEEECCCHHH
AAKRYFDFKTVIPCHYKTFDLLEQSATDLIDALPDVDVIEPQVMTPIRF
HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQIIWLGHGSFRIEIGDQVLLIDPWLTGNPMLAEDQHAAATTGATHILITHGHFDHTADV
CEEEEEECCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
VALSKSLEAPVVGIYDFMSYFEAKEGLSVVGFNMGGTVTLGDVAVSLVPALHSTSYGPDA
HHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCC
TAPLGREAGFIIKGERYTVYVSGDTGISAEMDWIGDYYKPDIGILSAGGHFTMDMKGAAY
CCCCCCCCCEEEECCEEEEEEECCCCCCEEHHHCCCCCCCCCEEEECCCEEEEECCCHHH
AAKRYFDFKTVIPCHYKTFDLLEQSATDLIDALPDVDVIEPQVMTPIRF
HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA