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The map label for this gene is ydjI [H]

Identifier: 110679270

GI number: 110679270

Start: 1898622

End: 1899758

Strand: Reverse

Name: ydjI [H]

Synonym: RD1_1986

Alternate gene names: 110679270

Gene position: 1899758-1898622 (Counterclockwise)

Preceding gene: 110679271

Following gene: 110679269

Centisome position: 45.96

GC content: 61.74

Gene sequence:

>1137_bases
ATGGGTATATTTGATTTTCTCTCCGGCGAATTCATCGACGTCATCCATTGGACGGACAACACCCGTGACACCATGGTGTG
GCGTTTCGAACGGGAAGGGCATGAGATCAAATATGGTGCGAAACTGACCGTGCGCGAGGGTCAGGCGGCCGTGTTTGTGC
ATGAGGGGCAACTGGCGGATGTCTTTACGCCGGGGCTTTATATGCTTGAAACCAACAACATGCCGGTGATGACGACGCTG
CAACACTGGAACCACGGCTTTCGCAGCCCGTTCAAATCCGAGGTGTATTTTGTCAACACGACCCGGTTCAGCGATCTCAA
ATGGGGCACCAAGAACCCCGTGATCTGCCGCGATCCGGAATTCGGCCCGGTCCGGCTGCGCGCCTTTGGCACCTATACGA
TCAAGGTGAGTGACCCGGCCAAATTCCTTGTCGAAATCGTTGGGACCGATGGCGAATTCACCATGGATGAGATCAGCTTT
CAGATCCGCAACATCATCGTGCAGGAATTTTCGCGCACGCTCGCGCGCGCAGGCATCCCGGTCATGGACATGGCCGCCAA
CACGCGTGAACTGGGTCAGCTGGTGGGCAAGGAAATCAGCGGCCAGTTGACCGAATACGGGCTGACCATGCCGGAGCTTT
ACATCGAAAACATCTCGCTGCCGCCGTCGGTGGAACAGGTCATGGACAAGCGCTCGTCGATGGGTGTGATCGGGAACCTC
AACGAATACATGCAGTTTCAGGCCGCTGAAGCCTTGGGCCGCGATGGCGGCGGGGCGGCTGCCCTGCAGACCGGTCTGGG
TGCCGGTCTGGGCATGCAGATCGGGCAGGCCGCCGCGCAACAGGCAGGCCCCTGGGGCGCGCGGGCCGAGGCGGCACCGG
CTGCTGCGGCGCGGCACATGGCCCCTCCCGCCCTGCCCCCGGTCGAACATGTCTGGCACATCGCAGAGCAGGGTCAGACC
AAGGGCCCCTTTTCAAAGGCCAAGATGGGCCGCATGGTGAGCGAAGGGGCGCTGACGCGTCAGACCCTCGTCTGGACGCC
CGGTCAGGACGGCTGGATGGCCGCCGAGGACGTCACGGAACTCGCACAGCTTTTCACCGTCCTGCCGCCTCCCCCGCCCC
TGCCGAACGCGGGATAA

Upstream 100 bases:

>100_bases
CATGAGCGCCGCCGAAGCCGCGCCGATCACACGGATCATCGCACGTGAATTGACCAATTCCGGCCCCTTGTAGGGCTTAC
AGACCAAAGGACCGAGACAT

Downstream 100 bases:

>100_bases
ACCCTTGAGAGACCGTCAGAAACCATATGCCGCGCCGTCACCGCTGAACCCGATCACGCGCCAGAAACCGACGAAAGCGC
GCGTGTCATGACCCGGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MGIFDFLSGEFIDVIHWTDNTRDTMVWRFEREGHEIKYGAKLTVREGQAAVFVHEGQLADVFTPGLYMLETNNMPVMTTL
QHWNHGFRSPFKSEVYFVNTTRFSDLKWGTKNPVICRDPEFGPVRLRAFGTYTIKVSDPAKFLVEIVGTDGEFTMDEISF
QIRNIIVQEFSRTLARAGIPVMDMAANTRELGQLVGKEISGQLTEYGLTMPELYIENISLPPSVEQVMDKRSSMGVIGNL
NEYMQFQAAEALGRDGGGAAALQTGLGAGLGMQIGQAAAQQAGPWGARAEAAPAAAARHMAPPALPPVEHVWHIAEQGQT
KGPFSKAKMGRMVSEGALTRQTLVWTPGQDGWMAAEDVTELAQLFTVLPPPPPLPNAG

Sequences:

>Translated_378_residues
MGIFDFLSGEFIDVIHWTDNTRDTMVWRFEREGHEIKYGAKLTVREGQAAVFVHEGQLADVFTPGLYMLETNNMPVMTTL
QHWNHGFRSPFKSEVYFVNTTRFSDLKWGTKNPVICRDPEFGPVRLRAFGTYTIKVSDPAKFLVEIVGTDGEFTMDEISF
QIRNIIVQEFSRTLARAGIPVMDMAANTRELGQLVGKEISGQLTEYGLTMPELYIENISLPPSVEQVMDKRSSMGVIGNL
NEYMQFQAAEALGRDGGGAAALQTGLGAGLGMQIGQAAAQQAGPWGARAEAAPAAAARHMAPPALPPVEHVWHIAEQGQT
KGPFSKAKMGRMVSEGALTRQTLVWTPGQDGWMAAEDVTELAQLFTVLPPPPPLPNAG
>Mature_377_residues
GIFDFLSGEFIDVIHWTDNTRDTMVWRFEREGHEIKYGAKLTVREGQAAVFVHEGQLADVFTPGLYMLETNNMPVMTTLQ
HWNHGFRSPFKSEVYFVNTTRFSDLKWGTKNPVICRDPEFGPVRLRAFGTYTIKVSDPAKFLVEIVGTDGEFTMDEISFQ
IRNIIVQEFSRTLARAGIPVMDMAANTRELGQLVGKEISGQLTEYGLTMPELYIENISLPPSVEQVMDKRSSMGVIGNLN
EYMQFQAAEALGRDGGGAAALQTGLGAGLGMQIGQAAAQQAGPWGARAEAAPAAAARHMAPPALPPVEHVWHIAEQGQTK
GPFSKAKMGRMVSEGALTRQTLVWTPGQDGWMAAEDVTELAQLFTVLPPPPPLPNAG

Specific function: Unknown

COG id: COG4260

COG function: function code S; Putative virion core protein (lumpy skin disease virus)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 41455; Mature: 41324

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFDFLSGEFIDVIHWTDNTRDTMVWRFEREGHEIKYGAKLTVREGQAAVFVHEGQLAD
CCCHHHHCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCEEEEECCCEEEEEECCCEEE
VFTPGLYMLETNNMPVMTTLQHWNHGFRSPFKSEVYFVNTTRFSDLKWGTKNPVICRDPE
ECCCCEEEEECCCCCEEEHHHHHCCHHCCCCCCCEEEEEECEECCCCCCCCCCEEEECCC
FGPVRLRAFGTYTIKVSDPAKFLVEIVGTDGEFTMDEISFQIRNIIVQEFSRTLARAGIP
CCCEEEEEEEEEEEEECCHHHEEHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
VMDMAANTRELGQLVGKEISGQLTEYGLTMPELYIENISLPPSVEQVMDKRSSMGVIGNL
HHHHCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCCEECCH
NEYMQFQAAEALGRDGGGAAALQTGLGAGLGMQIGQAAAQQAGPWGARAEAAPAAAARHM
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
APPALPPVEHVWHIAEQGQTKGPFSKAKMGRMVSEGALTRQTLVWTPGQDGWMAAEDVTE
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHH
LAQLFTVLPPPPPLPNAG
HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GIFDFLSGEFIDVIHWTDNTRDTMVWRFEREGHEIKYGAKLTVREGQAAVFVHEGQLAD
CCHHHHCCCEEEEEEECCCCCCEEEEEEECCCCEEEECCEEEEECCCEEEEEECCCEEE
VFTPGLYMLETNNMPVMTTLQHWNHGFRSPFKSEVYFVNTTRFSDLKWGTKNPVICRDPE
ECCCCEEEEECCCCCEEEHHHHHCCHHCCCCCCCEEEEEECEECCCCCCCCCCEEEECCC
FGPVRLRAFGTYTIKVSDPAKFLVEIVGTDGEFTMDEISFQIRNIIVQEFSRTLARAGIP
CCCEEEEEEEEEEEEECCHHHEEHEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCC
VMDMAANTRELGQLVGKEISGQLTEYGLTMPELYIENISLPPSVEQVMDKRSSMGVIGNL
HHHHCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHCCCEECCH
NEYMQFQAAEALGRDGGGAAALQTGLGAGLGMQIGQAAAQQAGPWGARAEAAPAAAARHM
HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
APPALPPVEHVWHIAEQGQTKGPFSKAKMGRMVSEGALTRQTLVWTPGQDGWMAAEDVTE
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHH
LAQLFTVLPPPPPLPNAG
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377 [H]