| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ppdK [H]
Identifier: 110679235
GI number: 110679235
Start: 1859397
End: 1861934
Strand: Direct
Name: ppdK [H]
Synonym: RD1_1948
Alternate gene names: 110679235
Gene position: 1859397-1861934 (Clockwise)
Preceding gene: 110679234
Following gene: 110679236
Centisome position: 44.99
GC content: 62.88
Gene sequence:
>2538_bases GTGCAGAATAATCCGAATACGACCCTCGTAACGCCCACAGCGCCCATCGCAAACAATACCCATGGCGGGCGCGCAAAGTG TCTCCAGCGGCTTGTGCGCCTCGATCTGCCGGTGCCGCGCACCGTCGCGCTGTCCTTTGAAGCGGTGCAGAATATCGCCC GGGGCCAGTTGCCGGATATCGCGGCCATCGTGTCCCAGTTTCCGGAGGATGCGTTGCTCTGCGTGCGTCCGTCTTCGGAG GATCCTGACTGGGGCGGGCCGGGCGCGGTTCTCAACATCGGGATGAATGACACGCGTTTTCAGGCGCTGGTGGACGAACT CGGCGCTGAGGCGGCAAGTTCGGTCTATACCCGTTTCGTGCAGTCCTTTGCGGTCGATGTGGCCCGGCTTGATCCGGATA TGTTCGATGATGTGGCGCAAAGCGGCCCACAGGCGTTGCAGGATTCCCTGCGGGCCTATGAAATCGAAATGGAAGAACCC TTTCCCACAGACCCCGGCGAGCAGCTTGCCGCTGTGCTGAAATCCATGGCGCGGGCGTGGGATGGCACGTCGGCGCGGCT GTTGCGGCAGGCCAAGGGCGCGCCTGCGGATGCGGGCTTGGGCCTTGTGGTGCAGCAGATGGCGCTCGGTGTCGGTCTGG GTGAATGCGGGTCCGGCGTCTTGCAGCTTGTCGACAGTGACACGGGGCTGCCGCAGATCACCGGGCGATACTTGAGCCAA AGCCAGGGACGCGACGCGGTCGAGGGGGATTCCTCGGCGCTTTATCTTGGGCGCGATCCGCGTGGGCCGTCGCTGGAAGA CCTCGTGCCGGAAGCCTTCGCGGAGCTTCAGGAGCATGCCGCGCTGATGCGGGTCAAACTGCGGGCCGAAATGCAACTGG AATTCGCGGTGGACAATGGCAAAGTCCATATCCTTGACGGGGTGCGGGTGCCGCGCTCCAGCCGTGCCGCTGTGCGCATC GCGGTGCGGCTTGCGCAAGACAAGGTGATCTCCAAAGCGGAAGCCTTGATGCGTGTCGAGCCGCGCACCTTGAGCGAGTT GTTGCACCGGCAGGTGCGCACCAATGCGGTGCGCGATGTGATCGGCAGCGGCATCGCAGCCAGTCCGGGTGCGGCGACCG GGGCGATCGTTTTTACCGCAACCGAAGCGCAGGCCAGTGCGGCGCGGGGTGAACCCTGTATCCTCGTGCGGCGCGAAACA GCACCGGAAGACATTCGCGGGATGCATGCCGCACAGGGCGTGCTGACCGAACGCGGGGGAATCACCAGCCATGCCGCCGT CATCGGCCGTGGGATCGGTCTTCCTTGTGTGGTTGGGGCGTCCGACATGCGGTTCCATCGCAGGCGCAAGGAACTGGTGG CCAGCGATGGTCGGGTGTTTTCAGCGGGGGACATCATCACCGTTGACGGCACTAACGGTCAGGTCCTCGCGGGTGCGCCG GAAATGCGCGAGGCGGCGCTGGATGAGAGCTTTCAGACGCTGATGGAATGGGCGGATGAGTTGCGCGACATTGAGATCCG CGCCAATGCCGACACGCCCGCCGATGCGCAGACCGCGCGGAATTTTCAGGCCGAAGGCATCGGGCTGTGCCGTACGGAAC ACATGTTCTTTGAACCGGGGCGCTTGACCGTCATGCGCGAGATGATTTTCGCCGCAAGCTCGCAGGACAGGCGCGCAGTG CTGGAACGCCTGTTGCCGATGCAGAGGGCGGACTTCACGCAGTTGTTCCGTATCATGGAAGGCAAACCGGTCTGTATCCG TCTGTTTGATCCGCCCCTGCATGAATTTCTGCCGACGGATCGGGCGGGGCAGCGCGAACTTGCGGATGCTTTGGATCTGC CGCTGTCTGACGTCACGCGCCGGATTGATGCGATGATGGAATACAACCCGATGCTGGGCCTGCGCGGTGTGCGCCTTGGC ATCACCGTGCCCGAAATCTACGAGATGCAGGCGCGCGCGATTTTCGAGGCAACGCTGGATGCCAGCGCGGATGGTGATCC GGTCGTGCCAGAGATCATGATCCCGCTGGTGTCCGCAAAGCGCGAGGTTGAACTGGTCAAGGCGTCCATCGACACGGTTG CCTCGTCGGTCAGGCTGGAAAAGGGGCAGGATTTCAACTACCGGCTCGGGGTGATGGTTGAAACGCCACGCGCGGCCATT CGAGCCGCCGACATCGCACCACATTGCGCCTTTCTGAGCTTTGGCACCAACGACCTGACGCAGATGACCTATGGCTTGTC GCGCGATGATGCGGGCCGTTTCATGTCCGATTATGTGCGGCAGGGTGTCTTTCCCGAAGACCCTTTTCATTCGCTTGATA CCGACGGTGTGGGGGAACTTTTGCAGATTGGGGCACAAAGAGGGCGGGAGGCGCGGCCTGACATCACGTTGTCCATTTGT GGCGAGCACGGGGGGAACCCCGAATCGATAGCCTTCTGCCGCGCCGCCGGATTCAACTATGTGTCGTGTTCGCCGTTTCG GGTCCCCGTGGCGCGACTAGCTGCCGCACAGCTTGCGATCGGACACAGCATTTCGTAG
Upstream 100 bases:
>100_bases AGGGCTGAACCGACCTGCGGCAAAATGGGAGCGCTTGCACTAGTGCTTGTCAGGCTAGGTTTACATTCTATGCTGCAGGC AAGTTCAAAAAGGTGCCGCA
Downstream 100 bases:
>100_bases TTTTGAGCGATTTCAGTACCATATCGGCTATTATGTGTTGCCGTAAAGCGTCAGATTGCCTGACCAATTAACCATGTTAA CGGCGGTAAACTTTACGTAA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MQNNPNTTLVTPTAPIANNTHGGRAKCLQRLVRLDLPVPRTVALSFEAVQNIARGQLPDIAAIVSQFPEDALLCVRPSSE DPDWGGPGAVLNIGMNDTRFQALVDELGAEAASSVYTRFVQSFAVDVARLDPDMFDDVAQSGPQALQDSLRAYEIEMEEP FPTDPGEQLAAVLKSMARAWDGTSARLLRQAKGAPADAGLGLVVQQMALGVGLGECGSGVLQLVDSDTGLPQITGRYLSQ SQGRDAVEGDSSALYLGRDPRGPSLEDLVPEAFAELQEHAALMRVKLRAEMQLEFAVDNGKVHILDGVRVPRSSRAAVRI AVRLAQDKVISKAEALMRVEPRTLSELLHRQVRTNAVRDVIGSGIAASPGAATGAIVFTATEAQASAARGEPCILVRRET APEDIRGMHAAQGVLTERGGITSHAAVIGRGIGLPCVVGASDMRFHRRRKELVASDGRVFSAGDIITVDGTNGQVLAGAP EMREAALDESFQTLMEWADELRDIEIRANADTPADAQTARNFQAEGIGLCRTEHMFFEPGRLTVMREMIFAASSQDRRAV LERLLPMQRADFTQLFRIMEGKPVCIRLFDPPLHEFLPTDRAGQRELADALDLPLSDVTRRIDAMMEYNPMLGLRGVRLG ITVPEIYEMQARAIFEATLDASADGDPVVPEIMIPLVSAKREVELVKASIDTVASSVRLEKGQDFNYRLGVMVETPRAAI RAADIAPHCAFLSFGTNDLTQMTYGLSRDDAGRFMSDYVRQGVFPEDPFHSLDTDGVGELLQIGAQRGREARPDITLSIC GEHGGNPESIAFCRAAGFNYVSCSPFRVPVARLAAAQLAIGHSIS
Sequences:
>Translated_845_residues MQNNPNTTLVTPTAPIANNTHGGRAKCLQRLVRLDLPVPRTVALSFEAVQNIARGQLPDIAAIVSQFPEDALLCVRPSSE DPDWGGPGAVLNIGMNDTRFQALVDELGAEAASSVYTRFVQSFAVDVARLDPDMFDDVAQSGPQALQDSLRAYEIEMEEP FPTDPGEQLAAVLKSMARAWDGTSARLLRQAKGAPADAGLGLVVQQMALGVGLGECGSGVLQLVDSDTGLPQITGRYLSQ SQGRDAVEGDSSALYLGRDPRGPSLEDLVPEAFAELQEHAALMRVKLRAEMQLEFAVDNGKVHILDGVRVPRSSRAAVRI AVRLAQDKVISKAEALMRVEPRTLSELLHRQVRTNAVRDVIGSGIAASPGAATGAIVFTATEAQASAARGEPCILVRRET APEDIRGMHAAQGVLTERGGITSHAAVIGRGIGLPCVVGASDMRFHRRRKELVASDGRVFSAGDIITVDGTNGQVLAGAP EMREAALDESFQTLMEWADELRDIEIRANADTPADAQTARNFQAEGIGLCRTEHMFFEPGRLTVMREMIFAASSQDRRAV LERLLPMQRADFTQLFRIMEGKPVCIRLFDPPLHEFLPTDRAGQRELADALDLPLSDVTRRIDAMMEYNPMLGLRGVRLG ITVPEIYEMQARAIFEATLDASADGDPVVPEIMIPLVSAKREVELVKASIDTVASSVRLEKGQDFNYRLGVMVETPRAAI RAADIAPHCAFLSFGTNDLTQMTYGLSRDDAGRFMSDYVRQGVFPEDPFHSLDTDGVGELLQIGAQRGREARPDITLSIC GEHGGNPESIAFCRAAGFNYVSCSPFRVPVARLAAAQLAIGHSIS >Mature_845_residues MQNNPNTTLVTPTAPIANNTHGGRAKCLQRLVRLDLPVPRTVALSFEAVQNIARGQLPDIAAIVSQFPEDALLCVRPSSE DPDWGGPGAVLNIGMNDTRFQALVDELGAEAASSVYTRFVQSFAVDVARLDPDMFDDVAQSGPQALQDSLRAYEIEMEEP FPTDPGEQLAAVLKSMARAWDGTSARLLRQAKGAPADAGLGLVVQQMALGVGLGECGSGVLQLVDSDTGLPQITGRYLSQ SQGRDAVEGDSSALYLGRDPRGPSLEDLVPEAFAELQEHAALMRVKLRAEMQLEFAVDNGKVHILDGVRVPRSSRAAVRI AVRLAQDKVISKAEALMRVEPRTLSELLHRQVRTNAVRDVIGSGIAASPGAATGAIVFTATEAQASAARGEPCILVRRET APEDIRGMHAAQGVLTERGGITSHAAVIGRGIGLPCVVGASDMRFHRRRKELVASDGRVFSAGDIITVDGTNGQVLAGAP EMREAALDESFQTLMEWADELRDIEIRANADTPADAQTARNFQAEGIGLCRTEHMFFEPGRLTVMREMIFAASSQDRRAV LERLLPMQRADFTQLFRIMEGKPVCIRLFDPPLHEFLPTDRAGQRELADALDLPLSDVTRRIDAMMEYNPMLGLRGVRLG ITVPEIYEMQARAIFEATLDASADGDPVVPEIMIPLVSAKREVELVKASIDTVASSVRLEKGQDFNYRLGVMVETPRAAI RAADIAPHCAFLSFGTNDLTQMTYGLSRDDAGRFMSDYVRQGVFPEDPFHSLDTDGVGELLQIGAQRGREARPDITLSIC GEHGGNPESIAFCRAAGFNYVSCSPFRVPVARLAAAQLAIGHSIS
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1789193, Length=434, Percent_Identity=25.8064516129032, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI1788756, Length=460, Percent_Identity=26.304347826087, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI48994992, Length=376, Percent_Identity=26.5957446808511, Blast_Score=93, Evalue=8e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 91302; Mature: 91302
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNNPNTTLVTPTAPIANNTHGGRAKCLQRLVRLDLPVPRTVALSFEAVQNIARGQLPDI CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHH AAIVSQFPEDALLCVRPSSEDPDWGGPGAVLNIGMNDTRFQALVDELGAEAASSVYTRFV HHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHHH QSFAVDVARLDPDMFDDVAQSGPQALQDSLRAYEIEMEEPFPTDPGEQLAAVLKSMARAW HHHHHHHHHCCHHHHHHHHHCCHHHHHHCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC DGTSARLLRQAKGAPADAGLGLVVQQMALGVGLGECGSGVLQLVDSDTGLPQITGRYLSQ CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHCCCCCCHHHHHHHHHH SQGRDAVEGDSSALYLGRDPRGPSLEDLVPEAFAELQEHAALMRVKLRAEMQLEFAVDNG CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC KVHILDGVRVPRSSRAAVRIAVRLAQDKVISKAEALMRVEPRTLSELLHRQVRTNAVRDV EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IGSGIAASPGAATGAIVFTATEAQASAARGEPCILVRRETAPEDIRGMHAAQGVLTERGG HCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC ITSHAAVIGRGIGLPCVVGASDMRFHRRRKELVASDGRVFSAGDIITVDGTNGQVLAGAP CCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCEEEECCC EMREAALDESFQTLMEWADELRDIEIRANADTPADAQTARNFQAEGIGLCRTEHMFFEPG HHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHCCCCCCCCEEEECCEEECCC RLTVMREMIFAASSQDRRAVLERLLPMQRADFTQLFRIMEGKPVCIRLFDPPLHEFLPTD HHHHHHHHHHHCCCCHHHHHHHHHHCHHCCCHHHHHHHHCCCCEEEEECCCCHHHHCCCC RAGQRELADALDLPLSDVTRRIDAMMEYNPMLGLRGVRLGITVPEIYEMQARAIFEATLD CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC ASADGDPVVPEIMIPLVSAKREVELVKASIDTVASSVRLEKGQDFNYRLGVMVETPRAAI CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHH RAADIAPHCAFLSFGTNDLTQMTYGLSRDDAGRFMSDYVRQGVFPEDPFHSLDTDGVGEL HHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LQIGAQRGREARPDITLSICGEHGGNPESIAFCRAAGFNYVSCSPFRVPVARLAAAQLAI HHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEHHCCCCCEECCCCHHHHHHHHHHHHHH GHSIS CCCCC >Mature Secondary Structure MQNNPNTTLVTPTAPIANNTHGGRAKCLQRLVRLDLPVPRTVALSFEAVQNIARGQLPDI CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHH AAIVSQFPEDALLCVRPSSEDPDWGGPGAVLNIGMNDTRFQALVDELGAEAASSVYTRFV HHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCHHHHHHHHHHHH QSFAVDVARLDPDMFDDVAQSGPQALQDSLRAYEIEMEEPFPTDPGEQLAAVLKSMARAW HHHHHHHHHCCHHHHHHHHHCCHHHHHHCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC DGTSARLLRQAKGAPADAGLGLVVQQMALGVGLGECGSGVLQLVDSDTGLPQITGRYLSQ CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHCCCCCCHHHHHHHHHH SQGRDAVEGDSSALYLGRDPRGPSLEDLVPEAFAELQEHAALMRVKLRAEMQLEFAVDNG CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCC KVHILDGVRVPRSSRAAVRIAVRLAQDKVISKAEALMRVEPRTLSELLHRQVRTNAVRDV EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH IGSGIAASPGAATGAIVFTATEAQASAARGEPCILVRRETAPEDIRGMHAAQGVLTERGG HCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC ITSHAAVIGRGIGLPCVVGASDMRFHRRRKELVASDGRVFSAGDIITVDGTNGQVLAGAP CCHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEECCCCEEEECCC EMREAALDESFQTLMEWADELRDIEIRANADTPADAQTARNFQAEGIGLCRTEHMFFEPG HHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHCCCCCCCCEEEECCEEECCC RLTVMREMIFAASSQDRRAVLERLLPMQRADFTQLFRIMEGKPVCIRLFDPPLHEFLPTD HHHHHHHHHHHCCCCHHHHHHHHHHCHHCCCHHHHHHHHCCCCEEEEECCCCHHHHCCCC RAGQRELADALDLPLSDVTRRIDAMMEYNPMLGLRGVRLGITVPEIYEMQARAIFEATLD CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHC ASADGDPVVPEIMIPLVSAKREVELVKASIDTVASSVRLEKGQDFNYRLGVMVETPRAAI CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHH RAADIAPHCAFLSFGTNDLTQMTYGLSRDDAGRFMSDYVRQGVFPEDPFHSLDTDGVGEL HHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LQIGAQRGREARPDITLSICGEHGGNPESIAFCRAAGFNYVSCSPFRVPVARLAAAQLAI HHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEHHCCCCCEECCCCHHHHHHHHHHHHHH GHSIS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]