Click here to switch to the map view.

The map label for this gene is 110679180

Identifier: 110679180

GI number: 110679180

Start: 1806045

End: 1806701

Strand: Direct

Name: 110679180

Synonym: RD1_1890

Alternate gene names: NA

Gene position: 1806045-1806701 (Clockwise)

Preceding gene: 110679179

Following gene: 110679192

Centisome position: 43.7

GC content: 56.01

Gene sequence:

>657_bases
ATGTCGGGCGAGCTTGTGAAAGCTCGCCCTTTCTTTTTGCGCGCCCGTGTCTTAAGCTGCGTTGCAGCGCTATTTTTTCG
GAGGCAACCCGTGGCGGAAAAACAAAAAACACTACTGATAAAGCGCTACGCCAGCAGACGGCTTTATAACACTGAAACCA
GCGACTATGTGACGCTCGAAGACATCGCGGGTTTCATCCGGGAGGGGCGCGAAGTGCAGATCCTCGACCTGAAGTCCGGG
GATGATCTGACCCGGCAATATCTGTTGCAGATTATCGCCGAGCATGAGAGCCGTGGTGAAAGTGTCCTGCCGGTTGATGT
GCTCAACGATCTGGTGCGCAGCTACATGACCCCCGGTGCCAGCGTCGTGCCGCAGTTCCTGCAGGCTTCTTTCGAAATGC
TGCGCAGCGGGCAAAGCCAGATGCTGGATCAGATGGGCTCGATGAACCCGATGGCAAAGATGCCGGGCTTCGAGATGATG
GAGGCCCAGCAAAAGGCCTTTATGAAGGCCATGACTGGCGGTCTGGCCGGATCTTCCGGCTGGAACACCAAGGATGAAGC
CGAAGCCGAGGACGCCGCAGATGAACAGGGCGAAGATCTGGATTCCATCAAGCAGCAGCTTTCGGAACTGCAGGACAAGC
TGTCAAAGCTGAAATAG

Upstream 100 bases:

>100_bases
GAAAGCAACCAACGAAGCGACTGCAGTTGTCAAGAAAGCTGCAAAAGCCAACTAAGTCAGAAATCTGATTTGCGCTGGAT
CCTCCCTGTAAGGCGCAATG

Downstream 100 bases:

>100_bases
CCCGTAGCGGGCGCATCTGTCGAAGTACCCGAAACATCAGGTATCACATAACGCCCTGAAATCTTTGATTTCAGGCAGTG
TTTGCGTGGTTCAGGTTTTT

Product: polyhydroxyalkanoate synthesis repressor

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSGELVKARPFFLRARVLSCVAALFFRRQPVAEKQKTLLIKRYASRRLYNTETSDYVTLEDIAGFIREGREVQILDLKSG
DDLTRQYLLQIIAEHESRGESVLPVDVLNDLVRSYMTPGASVVPQFLQASFEMLRSGQSQMLDQMGSMNPMAKMPGFEMM
EAQQKAFMKAMTGGLAGSSGWNTKDEAEAEDAADEQGEDLDSIKQQLSELQDKLSKLK

Sequences:

>Translated_218_residues
MSGELVKARPFFLRARVLSCVAALFFRRQPVAEKQKTLLIKRYASRRLYNTETSDYVTLEDIAGFIREGREVQILDLKSG
DDLTRQYLLQIIAEHESRGESVLPVDVLNDLVRSYMTPGASVVPQFLQASFEMLRSGQSQMLDQMGSMNPMAKMPGFEMM
EAQQKAFMKAMTGGLAGSSGWNTKDEAEAEDAADEQGEDLDSIKQQLSELQDKLSKLK
>Mature_217_residues
SGELVKARPFFLRARVLSCVAALFFRRQPVAEKQKTLLIKRYASRRLYNTETSDYVTLEDIAGFIREGREVQILDLKSGD
DLTRQYLLQIIAEHESRGESVLPVDVLNDLVRSYMTPGASVVPQFLQASFEMLRSGQSQMLDQMGSMNPMAKMPGFEMME
AQQKAFMKAMTGGLAGSSGWNTKDEAEAEDAADEQGEDLDSIKQQLSELQDKLSKLK

Specific function: Unknown

COG id: COG5394

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012909
- InterPro:   IPR010134
- InterPro:   IPR007897 [H]

Pfam domain/function: PF05233 PHB_acc; PF07879 PHB_acc_N [H]

EC number: NA

Molecular weight: Translated: 24470; Mature: 24339

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGELVKARPFFLRARVLSCVAALFFRRQPVAEKQKTLLIKRYASRRLYNTETSDYVTLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
DIAGFIREGREVQILDLKSGDDLTRQYLLQIIAEHESRGESVLPVDVLNDLVRSYMTPGA
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
SVVPQFLQASFEMLRSGQSQMLDQMGSMNPMAKMPGFEMMEAQQKAFMKAMTGGLAGSSG
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
WNTKDEAEAEDAADEQGEDLDSIKQQLSELQDKLSKLK
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGELVKARPFFLRARVLSCVAALFFRRQPVAEKQKTLLIKRYASRRLYNTETSDYVTLE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHH
DIAGFIREGREVQILDLKSGDDLTRQYLLQIIAEHESRGESVLPVDVLNDLVRSYMTPGA
HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCH
SVVPQFLQASFEMLRSGQSQMLDQMGSMNPMAKMPGFEMMEAQQKAFMKAMTGGLAGSSG
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
WNTKDEAEAEDAADEQGEDLDSIKQQLSELQDKLSKLK
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7763384 [H]