Click here to switch to the map view.

The map label for this gene is qseD [H]

Identifier: 110679131

GI number: 110679131

Start: 1762093

End: 1762983

Strand: Reverse

Name: qseD [H]

Synonym: RD1_1837

Alternate gene names: 110679131

Gene position: 1762983-1762093 (Counterclockwise)

Preceding gene: 110679134

Following gene: 110679129

Centisome position: 42.66

GC content: 56.23

Gene sequence:

>891_bases
ATGCAATTTCAATGGCTGGACGACGTTCTTGTGCTGCTGGAGGAAGGCAATATGTCTCGGGCTGCGGCGCGCCGAAACAT
CACCCAGCCTGCGTTTTCAAGGCGGATTCGCGGGTTTGAGGATTGGCTCGGCACGGACATTATCGAGCGCAAGATGAACC
GGGTTGAGATCAGCGAAGCGCTCATATCCAACGAAGATGAGATTCGCGCACTGATGACTCGTTTGCGCGAGTTGCGCACA
AAAATTGCGCATTATGAAAAGTCGCGGATGACCGTTGAACTGGCCGCCCAGCACGCACCGATATGTGCGGCTTTTCCCGA
CATGGCCCTGCGCGCGAGGCAAGAGCTGCACGGCCTGCAGTTCCGGTTGCGCGCCGGCAATCTGAACGACTGCGTGTCCA
TGTTTCTACGCGGTGATACAAGCATGTTGCTATGCTATCAGGCAGAAAGTGTGCGCAGGCTTCAATTCGGTCCGGACATC
ATACGCGGCGTATGGGGAAATGACTATCTGGTGCCCGTCGTCGGTGGGGCCTTGCGCTCTGTCGTGACAGATTTCGGCAC
GGTTCCCGCGCATACGCCCGCAATCGTCTATCCAGAGCACAGCTACTTTGGCGAAGTGCTGCGCAGGAATAACAGACCTT
TCGGCATTCCGAGTTCCAGCGCAAACACGTTCAGCGTTTCGGCCTTTTCGAGTGGTACGCGCGAACTTGTTCTGAAGGGG
TTGGGCATCGGTTGGTTGCCTTTCAGCATGGCGCACCGGGAAATCGAAAGTGGAGAGTTGATTTCGCTTGCAAACCACTA
CGGTCAGGAAGCGCTTCAAGTGGCGATCTACGCCGACAAAACAGTCGAAACCGCCCGGACACTGATGGAAATCTGGGCGC
AGGATGGTTGA

Upstream 100 bases:

>100_bases
AAATCGCCTTCAGGCAAAGCATCCTCTGGGGTCATACAGAAAAACAGTGCTTTTTTCTATGGCTGCCCATACGATTGATA
TGAGCAGAGGGGTGAAACGG

Downstream 100 bases:

>100_bases
AGCATGCCCGCTACCGCCTGCGGCGGATGTGTTGGATTACGCATTTCGGTTCAGATATGCCTCGAACGCCGCCAGCCCTT
CGTCCAGCCCGCGGCGACCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQFQWLDDVLVLLEEGNMSRAAARRNITQPAFSRRIRGFEDWLGTDIIERKMNRVEISEALISNEDEIRALMTRLRELRT
KIAHYEKSRMTVELAAQHAPICAAFPDMALRARQELHGLQFRLRAGNLNDCVSMFLRGDTSMLLCYQAESVRRLQFGPDI
IRGVWGNDYLVPVVGGALRSVVTDFGTVPAHTPAIVYPEHSYFGEVLRRNNRPFGIPSSSANTFSVSAFSSGTRELVLKG
LGIGWLPFSMAHREIESGELISLANHYGQEALQVAIYADKTVETARTLMEIWAQDG

Sequences:

>Translated_296_residues
MQFQWLDDVLVLLEEGNMSRAAARRNITQPAFSRRIRGFEDWLGTDIIERKMNRVEISEALISNEDEIRALMTRLRELRT
KIAHYEKSRMTVELAAQHAPICAAFPDMALRARQELHGLQFRLRAGNLNDCVSMFLRGDTSMLLCYQAESVRRLQFGPDI
IRGVWGNDYLVPVVGGALRSVVTDFGTVPAHTPAIVYPEHSYFGEVLRRNNRPFGIPSSSANTFSVSAFSSGTRELVLKG
LGIGWLPFSMAHREIESGELISLANHYGQEALQVAIYADKTVETARTLMEIWAQDG
>Mature_296_residues
MQFQWLDDVLVLLEEGNMSRAAARRNITQPAFSRRIRGFEDWLGTDIIERKMNRVEISEALISNEDEIRALMTRLRELRT
KIAHYEKSRMTVELAAQHAPICAAFPDMALRARQELHGLQFRLRAGNLNDCVSMFLRGDTSMLLCYQAESVRRLQFGPDI
IRGVWGNDYLVPVVGGALRSVVTDFGTVPAHTPAIVYPEHSYFGEVLRRNNRPFGIPSSSANTFSVSAFSSGTRELVLKG
LGIGWLPFSMAHREIESGELISLANHYGQEALQVAIYADKTVETARTLMEIWAQDG

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=273, Percent_Identity=28.9377289377289, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33331; Mature: 33331

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFQWLDDVLVLLEEGNMSRAAARRNITQPAFSRRIRGFEDWLGTDIIERKMNRVEISEA
CCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LISNEDEIRALMTRLRELRTKIAHYEKSRMTVELAAQHAPICAAFPDMALRARQELHGLQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHCCE
FRLRAGNLNDCVSMFLRGDTSMLLCYQAESVRRLQFGPDIIRGVWGNDYLVPVVGGALRS
EEEECCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHH
VVTDFGTVPAHTPAIVYPEHSYFGEVLRRNNRPFGIPSSSANTFSVSAFSSGTRELVLKG
HHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHH
LGIGWLPFSMAHREIESGELISLANHYGQEALQVAIYADKTVETARTLMEIWAQDG
CCCCCHHHHHHHHHCCCCCEEHHHHHHCHHHEEEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQFQWLDDVLVLLEEGNMSRAAARRNITQPAFSRRIRGFEDWLGTDIIERKMNRVEISEA
CCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LISNEDEIRALMTRLRELRTKIAHYEKSRMTVELAAQHAPICAAFPDMALRARQELHGLQ
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCCHHHHHHHHHHHHHHHHCCE
FRLRAGNLNDCVSMFLRGDTSMLLCYQAESVRRLQFGPDIIRGVWGNDYLVPVVGGALRS
EEEECCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHCCCCCEEHHHHHHHHHH
VVTDFGTVPAHTPAIVYPEHSYFGEVLRRNNRPFGIPSSSANTFSVSAFSSGTRELVLKG
HHHHHCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHCCCHHHHHHHH
LGIGWLPFSMAHREIESGELISLANHYGQEALQVAIYADKTVETARTLMEIWAQDG
CCCCCHHHHHHHHHCCCCCEEHHHHHHCHHHEEEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]