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The map label for this gene is 110679017

Identifier: 110679017

GI number: 110679017

Start: 1648701

End: 1649198

Strand: Reverse

Name: 110679017

Synonym: RD1_1716

Alternate gene names: NA

Gene position: 1649198-1648701 (Counterclockwise)

Preceding gene: 110679018

Following gene: 110679016

Centisome position: 39.9

GC content: 55.42

Gene sequence:

>498_bases
GTGCTGGCATTTGCAGACGCGGTTGATCGGCTGAACCAAAAGGTCGCTTATGCGGTGCGCTGGCTGGCTCTGGCGATGGT
GCTGGTACAGTTTTGCATTGTCATTGGCCGCTATGTGTTTGGCTACAATTCCATCGCAGCGCAGGAAAGCGTGCTCTACA
TGCATGCGACCCTTTTCATGCTGGGAGCGGGGTATACGCTGCTGGTCGACAAACACGTCCGTGTCGATGTCTTCTACGCC
AAGCTCACCGAACGTAGCCGCCGCAGGGTCGATATCTTTGGACATGTGTTTTTGCTGCTGCCCTCCATGACGGTGCTGCT
CTATTGGTCGTGGCCTTCGGTGCGCAATTCCTGGAAAATCCTTGAGGGTCCGATGTCCGTCGGCGGGATCGAGGCCGTCT
TTCTGCTCAAATCGCTGATCCCGGCGTTTTGCTGTCTCATCATCCTGCAATCGCTGTCCCTTTTGATCCGTCTGCTTGTG
CAAGGTGCAAAATCGTGA

Upstream 100 bases:

>100_bases
GGCAGATGAATGCCCGCGCCGGAGTTTTCGGCTACTGAAACACCGCTGGCGCGCGGCCCTGTGCTGCGCGCCCATCCTGC
GGTAACGAGGGGGAAGTAGC

Downstream 100 bases:

>100_bases
CCGAATACCTGGACCTGATCATGTTTGCAGCCCTCATGGTCGCGATCCTTTCAGGCTTTCCCGTCTCTTTCAGCATCGCG
GGCGTGGCGGTGATCTTTGC

Product: TRAP transporter, DctQ-like membrane protein, putative

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; Tripartite Transporter Small Subunit; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; Permease; TRAP Transporter DctQ Family Protein; TRAP C4-Dicarboxylate Transport System DctQ Subunit; TRAP Dicarboxylate Family Transporter DctQ Subunit; TRAP-Type Transporter Small Permease Component; Small Permease Of TRAP-Type Transporter; Trap Dicarboxylate Transporter Dctm Subunit; Trap-Type Transport System Small Permease Component; TRAP Dicarboxylate Transporter; TRAP-Type Large Permease Component; TRAP-T Family Tripartite Transporter; TRAP Transporter Small Transmembrane Protein; Transporter DctQ-Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP-Type Transport System Small Permease Component; TRAP Transporter Small Subunit; C4-Dicarboxylate Transporter Permease; Tripartite ATP-Independent Periplasmic Protein; Permease Protein; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MLAFADAVDRLNQKVAYAVRWLALAMVLVQFCIVIGRYVFGYNSIAAQESVLYMHATLFMLGAGYTLLVDKHVRVDVFYA
KLTERSRRRVDIFGHVFLLLPSMTVLLYWSWPSVRNSWKILEGPMSVGGIEAVFLLKSLIPAFCCLIILQSLSLLIRLLV
QGAKS

Sequences:

>Translated_165_residues
MLAFADAVDRLNQKVAYAVRWLALAMVLVQFCIVIGRYVFGYNSIAAQESVLYMHATLFMLGAGYTLLVDKHVRVDVFYA
KLTERSRRRVDIFGHVFLLLPSMTVLLYWSWPSVRNSWKILEGPMSVGGIEAVFLLKSLIPAFCCLIILQSLSLLIRLLV
QGAKS
>Mature_165_residues
MLAFADAVDRLNQKVAYAVRWLALAMVLVQFCIVIGRYVFGYNSIAAQESVLYMHATLFMLGAGYTLLVDKHVRVDVFYA
KLTERSRRRVDIFGHVFLLLPSMTVLLYWSWPSVRNSWKILEGPMSVGGIEAVFLLKSLIPAFCCLIILQSLSLLIRLLV
QGAKS

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18632; Mature: 18632

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFADAVDRLNQKVAYAVRWLALAMVLVQFCIVIGRYVFGYNSIAAQESVLYMHATLFM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGAGYTLLVDKHVRVDVFYAKLTERSRRRVDIFGHVFLLLPSMTVLLYWSWPSVRNSWKI
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHH
LEGPMSVGGIEAVFLLKSLIPAFCCLIILQSLSLLIRLLVQGAKS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLAFADAVDRLNQKVAYAVRWLALAMVLVQFCIVIGRYVFGYNSIAAQESVLYMHATLFM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGAGYTLLVDKHVRVDVFYAKLTERSRRRVDIFGHVFLLLPSMTVLLYWSWPSVRNSWKI
HHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHH
LEGPMSVGGIEAVFLLKSLIPAFCCLIILQSLSLLIRLLVQGAKS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA