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The map label for this gene is siaT [H]

Identifier: 110679016

GI number: 110679016

Start: 1647154

End: 1648704

Strand: Reverse

Name: siaT [H]

Synonym: RD1_1715

Alternate gene names: 110679016

Gene position: 1648704-1647154 (Counterclockwise)

Preceding gene: 110679017

Following gene: 110679015

Centisome position: 39.89

GC content: 60.54

Gene sequence:

>1551_bases
GTGACCGAATACCTGGACCTGATCATGTTTGCAGCCCTCATGGTCGCGATCCTTTCAGGCTTTCCCGTCTCTTTCAGCAT
CGCGGGCGTGGCGGTGATCTTTGCCTATCTCGGTTGGATGATGGGGATCATGAATGTCTCCCTTCTGGGGGCTTTGGGGC
AACGCGCCTTTGGCCTGATCAGCAATCAGGTGCTGATCGCCATCCCGGTTTTCGTACTGATGGGCGCGATACTTGAAAAA
AGCAAGATCGCCGAAGAGCTGCTCGACACCATGGCGCGCTGCTTTGGTCAGTTGCGGGGTGGCTTGGGTATTTCCGTGGT
TCTGGTCGGGGCGCTGCTGGCGGCCTCGACGGGCATTGTGGGCGCGACGGTCATCGCGATGGGCTTGATCGCGCTGCCCA
CGATGCTGCGTGCAGGTTACAACCCGGCGGTCGCCTCGGGCATTGTCTGCACGGCGGGCACTCTGGGGCAGATCATCCCC
CCCTCAACCCTGCTCATCATCCTCGCTGATGTGATGTCAAACGCCTTCCAGCAAGCCCAATACGAACAGGGCAAGTTCTC
GGTCGAGGCGCTTTCGGTGGGGCAGTTTTTTGCCGCAGCCCTCATACCGGGCCTGCTTTTGGTGACGCTCTACCTGCTCT
ATATCCTCATACGCGGCGCGCTCAGACCGACCGATATGCCCCCGGCGGAACTCGGTCTGGGCCGCCCGGACAGCCGTGAG
GTTCTGGCGGCGATCCTGCCGCCTGTCCTGCTGATCTTTGCGGTGCTGGGCGCCATCCTTGGCGGCATTGCCACCCCGAC
AGAAGCGGCCTCCGTCGGCGCGATCGGAGCGCTTTTGATGGCCGGGCGTAAAACCGGCAGTCACACGCGGCTGATCCTTC
TGGGCGTTGCGGCCTTGATTGTGCTGGCCATTCTCGCGGGGTCCTTTCCAATTCGCCTGCAGCGCAACGACAATGGCATG
CTGGAATGGATGGCCGGGGGCGTCTACGGGCTGCTTGCGCTGACGGGGCTTGGCGCGGTTGGATTGGCGCTGCGGGCCGC
ATTTCGCAAAAGGATCATCCATGATGCGTTGAATTCGACCCTCACCATGACAGCGATGATCTTTGCAACCATCCTTGCGG
CGGGTTTCTTTTCGCTGGTCTTCATTGGCCTGGGCGGAGAGGAACGCGTCGAACACGTCCTCGCCAGCCTGCCCGGCGGC
CCCAGCGGTACATTGCTGTTCGTGATGCTCTTTGTATTCGTTCTGGGCTTTTTCCTCGATTTTGTCGAAATCTCCGTCAT
CGTACTGCCTTTGGTGGTCCCGTCCCTGATCGTGATGGGCCATGACCCGATATGGCTAGGCATCCTTCTGGCCATCAACC
TGCAAACCAGCTTTCTGACGCCGCCCTTCGGGTTTTCCCTGTTTTATCTGCGCGCGGCAGCCCCGGACGAGATTGCAACA
AGCCAGATCTATCGCGGGGTGGTGCCTTTCATTGCCCTGCAGGCAGTCGGCATTTTCCTTGTCTGGAGCATGCCATCCCT
CGCCACGTGGCTGCCCGACGCCCTGTTTTAG

Upstream 100 bases:

>100_bases
CCGTCTTTCTGCTCAAATCGCTGATCCCGGCGTTTTGCTGTCTCATCATCCTGCAATCGCTGTCCCTTTTGATCCGTCTG
CTTGTGCAAGGTGCAAAATC

Downstream 100 bases:

>100_bases
CAATCCGGGCCCGTTTACCCCTTCCCCGCGCCCCGGACCGCCTAAACGGGTGTTCAAATCACCCACGCCACTCTACGATC
ACGCTCAACACAAATTGAGG

Product: putative TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: N-acetylneuraminic acid permease; N-acetylneuraminic acid transporter; Neu5Ac permease [H]

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MTEYLDLIMFAALMVAILSGFPVSFSIAGVAVIFAYLGWMMGIMNVSLLGALGQRAFGLISNQVLIAIPVFVLMGAILEK
SKIAEELLDTMARCFGQLRGGLGISVVLVGALLAASTGIVGATVIAMGLIALPTMLRAGYNPAVASGIVCTAGTLGQIIP
PSTLLIILADVMSNAFQQAQYEQGKFSVEALSVGQFFAAALIPGLLLVTLYLLYILIRGALRPTDMPPAELGLGRPDSRE
VLAAILPPVLLIFAVLGAILGGIATPTEAASVGAIGALLMAGRKTGSHTRLILLGVAALIVLAILAGSFPIRLQRNDNGM
LEWMAGGVYGLLALTGLGAVGLALRAAFRKRIIHDALNSTLTMTAMIFATILAAGFFSLVFIGLGGEERVEHVLASLPGG
PSGTLLFVMLFVFVLGFFLDFVEISVIVLPLVVPSLIVMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRAAAPDEIAT
SQIYRGVVPFIALQAVGIFLVWSMPSLATWLPDALF

Sequences:

>Translated_516_residues
MTEYLDLIMFAALMVAILSGFPVSFSIAGVAVIFAYLGWMMGIMNVSLLGALGQRAFGLISNQVLIAIPVFVLMGAILEK
SKIAEELLDTMARCFGQLRGGLGISVVLVGALLAASTGIVGATVIAMGLIALPTMLRAGYNPAVASGIVCTAGTLGQIIP
PSTLLIILADVMSNAFQQAQYEQGKFSVEALSVGQFFAAALIPGLLLVTLYLLYILIRGALRPTDMPPAELGLGRPDSRE
VLAAILPPVLLIFAVLGAILGGIATPTEAASVGAIGALLMAGRKTGSHTRLILLGVAALIVLAILAGSFPIRLQRNDNGM
LEWMAGGVYGLLALTGLGAVGLALRAAFRKRIIHDALNSTLTMTAMIFATILAAGFFSLVFIGLGGEERVEHVLASLPGG
PSGTLLFVMLFVFVLGFFLDFVEISVIVLPLVVPSLIVMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRAAAPDEIAT
SQIYRGVVPFIALQAVGIFLVWSMPSLATWLPDALF
>Mature_515_residues
TEYLDLIMFAALMVAILSGFPVSFSIAGVAVIFAYLGWMMGIMNVSLLGALGQRAFGLISNQVLIAIPVFVLMGAILEKS
KIAEELLDTMARCFGQLRGGLGISVVLVGALLAASTGIVGATVIAMGLIALPTMLRAGYNPAVASGIVCTAGTLGQIIPP
STLLIILADVMSNAFQQAQYEQGKFSVEALSVGQFFAAALIPGLLLVTLYLLYILIRGALRPTDMPPAELGLGRPDSREV
LAAILPPVLLIFAVLGAILGGIATPTEAASVGAIGALLMAGRKTGSHTRLILLGVAALIVLAILAGSFPIRLQRNDNGML
EWMAGGVYGLLALTGLGAVGLALRAAFRKRIIHDALNSTLTMTAMIFATILAAGFFSLVFIGLGGEERVEHVLASLPGGP
SGTLLFVMLFVFVLGFFLDFVEISVIVLPLVVPSLIVMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRAAAPDEIATS
QIYRGVVPFIALQAVGIFLVWSMPSLATWLPDALF

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid [H]

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the TRAP transporter large permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR007387
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM; PF04290 DctQ [H]

EC number: NA

Molecular weight: Translated: 54125; Mature: 53994

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYLDLIMFAALMVAILSGFPVSFSIAGVAVIFAYLGWMMGIMNVSLLGALGQRAFGLI
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNQVLIAIPVFVLMGAILEKSKIAEELLDTMARCFGQLRGGLGISVVLVGALLAASTGIV
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH
GATVIAMGLIALPTMLRAGYNPAVASGIVCTAGTLGQIIPPSTLLIILADVMSNAFQQAQ
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YEQGKFSVEALSVGQFFAAALIPGLLLVTLYLLYILIRGALRPTDMPPAELGLGRPDSRE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
VLAAILPPVLLIFAVLGAILGGIATPTEAASVGAIGALLMAGRKTGSHTRLILLGVAALI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VLAILAGSFPIRLQRNDNGMLEWMAGGVYGLLALTGLGAVGLALRAAFRKRIIHDALNST
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMTAMIFATILAAGFFSLVFIGLGGEERVEHVLASLPGGPSGTLLFVMLFVFVLGFFLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FVEISVIVLPLVVPSLIVMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRAAAPDEIAT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
SQIYRGVVPFIALQAVGIFLVWSMPSLATWLPDALF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
>Mature Secondary Structure 
TEYLDLIMFAALMVAILSGFPVSFSIAGVAVIFAYLGWMMGIMNVSLLGALGQRAFGLI
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNQVLIAIPVFVLMGAILEKSKIAEELLDTMARCFGQLRGGLGISVVLVGALLAASTGIV
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH
GATVIAMGLIALPTMLRAGYNPAVASGIVCTAGTLGQIIPPSTLLIILADVMSNAFQQAQ
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YEQGKFSVEALSVGQFFAAALIPGLLLVTLYLLYILIRGALRPTDMPPAELGLGRPDSRE
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHH
VLAAILPPVLLIFAVLGAILGGIATPTEAASVGAIGALLMAGRKTGSHTRLILLGVAALI
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VLAILAGSFPIRLQRNDNGMLEWMAGGVYGLLALTGLGAVGLALRAAFRKRIIHDALNST
HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMTAMIFATILAAGFFSLVFIGLGGEERVEHVLASLPGGPSGTLLFVMLFVFVLGFFLD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FVEISVIVLPLVVPSLIVMGHDPIWLGILLAINLQTSFLTPPFGFSLFYLRAAAPDEIAT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
SQIYRGVVPFIALQAVGIFLVWSMPSLATWLPDALF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]