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The map label for this gene is glxA [H]

Identifier: 110679003

GI number: 110679003

Start: 1634085

End: 1635086

Strand: Reverse

Name: glxA [H]

Synonym: RD1_1700

Alternate gene names: 110679003

Gene position: 1635086-1634085 (Counterclockwise)

Preceding gene: 110679008

Following gene: 110679002

Centisome position: 39.56

GC content: 59.38

Gene sequence:

>1002_bases
ATGAAGCACCCTGATTCTGCCATTTCTTCAGATCGCACGCGCTTGCGCATCGGATTCATCCTGACGCGGCAATTTACGAT
CTGTGCCTTTGCAAATTTTGTCGATGTGCTGCGCCTGGCCTCCGACGAAGGCGACCGCTCGCGTGCCATTCTGTGCAATT
GGCGGGTGCTCTCTGCGGACATGACCCCCGTCACTTCTTCAAGTGGCGTCACGGTGCAGCCCGAAGAGCGCCTTGGCGAC
CCCAGACGCTTTGATTATATCGTGGTCATTGGCGGCCTGATGGGCGAGTTGGAGCAGGTCGAACCCGAATACACCGCCTT
TCTGCGCCGGGCGGCGATGGCGCGTGTACCTTTGATCGGCGTGTGCACCGGGTCTTTCGTGTTGCACGCTGCCGGGCTTC
TGGATGGTTATCGCTGCTGCGTCAGCTGGTTTCACCATAATGACTTTCTTGAGCAGTTTGATGGGTTGGAGCCGGTATCC
GATCAGATTTTCGTGGTCGACCGGGACCGGCTGACATGTTCTGGCGGCACAAGTTCCGCGCATCTCGCGGCCTTTCTCGT
GGACCGCCACATCAGCAAGGCCGCCGCGCGCAAAAGCCTGTCCATCATGATGATCGACGAGGCGATGGAAGCCGACCGCC
CGCAACCGGGGTTGCCGCTGGATATGACAACCAGCGACCCCATCGTGCGGCGTGCCTTGCTGCTGCTGCAACAAGCGCTG
GACGCGCCGCCGACACTTTCCACCCTCGCTGCACGCCTGAAGGTAAGTCCAAGAACACTGGAACGCCGCTTTGACGCCGC
GCTGAACATGACGCCTTTCGAGGCAGGCAAACGGATACGTCTGGCGCAGGCCGAACGCCTCTTGCGACAGACGCAACGGT
CCGTGACGCAGATTGCGCAGGATACGGGTTTCTCGGATGTGTCCCATTTCATTCGGGTTTTCAAAGCGACCTATGACATC
ACGCCAGAAAACTGGCGGCTCAAGCGAACATCATCAGCGTGA

Upstream 100 bases:

>100_bases
CGGCCTTCCCGAACAGTCAAAATGTGAAGCTCGCGCTCGTTAACACATTATCCCGAGTCGCCGCTGTATAATAACGCCAG
ATGCGCGTTATTATATCGTC

Downstream 100 bases:

>100_bases
TAACACCGGTCAACAATGTGCCGAGAACGGGTTCCAACGACACAAGGTCACGGATCTCTTGCCCGTTTCGACCAACTCAA
ACGGAGTCTTAACGGATAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MKHPDSAISSDRTRLRIGFILTRQFTICAFANFVDVLRLASDEGDRSRAILCNWRVLSADMTPVTSSSGVTVQPEERLGD
PRRFDYIVVIGGLMGELEQVEPEYTAFLRRAAMARVPLIGVCTGSFVLHAAGLLDGYRCCVSWFHHNDFLEQFDGLEPVS
DQIFVVDRDRLTCSGGTSSAHLAAFLVDRHISKAAARKSLSIMMIDEAMEADRPQPGLPLDMTTSDPIVRRALLLLQQAL
DAPPTLSTLAARLKVSPRTLERRFDAALNMTPFEAGKRIRLAQAERLLRQTQRSVTQIAQDTGFSDVSHFIRVFKATYDI
TPENWRLKRTSSA

Sequences:

>Translated_333_residues
MKHPDSAISSDRTRLRIGFILTRQFTICAFANFVDVLRLASDEGDRSRAILCNWRVLSADMTPVTSSSGVTVQPEERLGD
PRRFDYIVVIGGLMGELEQVEPEYTAFLRRAAMARVPLIGVCTGSFVLHAAGLLDGYRCCVSWFHHNDFLEQFDGLEPVS
DQIFVVDRDRLTCSGGTSSAHLAAFLVDRHISKAAARKSLSIMMIDEAMEADRPQPGLPLDMTTSDPIVRRALLLLQQAL
DAPPTLSTLAARLKVSPRTLERRFDAALNMTPFEAGKRIRLAQAERLLRQTQRSVTQIAQDTGFSDVSHFIRVFKATYDI
TPENWRLKRTSSA
>Mature_333_residues
MKHPDSAISSDRTRLRIGFILTRQFTICAFANFVDVLRLASDEGDRSRAILCNWRVLSADMTPVTSSSGVTVQPEERLGD
PRRFDYIVVIGGLMGELEQVEPEYTAFLRRAAMARVPLIGVCTGSFVLHAAGLLDGYRCCVSWFHHNDFLEQFDGLEPVS
DQIFVVDRDRLTCSGGTSSAHLAAFLVDRHISKAAARKSLSIMMIDEAMEADRPQPGLPLDMTTSDPIVRRALLLLQQAL
DAPPTLSTLAARLKVSPRTLERRFDAALNMTPFEAGKRIRLAQAERLLRQTQRSVTQIAQDTGFSDVSHFIRVFKATYDI
TPENWRLKRTSSA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37170; Mature: 37170

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHPDSAISSDRTRLRIGFILTRQFTICAFANFVDVLRLASDEGDRSRAILCNWRVLSAD
CCCCCCHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC
MTPVTSSSGVTVQPEERLGDPRRFDYIVVIGGLMGELEQVEPEYTAFLRRAAMARVPLIG
CCCCCCCCCCEECCHHHCCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCEEE
VCTGSFVLHAAGLLDGYRCCVSWFHHNDFLEQFDGLEPVSDQIFVVDRDRLTCSGGTSSA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCHH
HLAAFLVDRHISKAAARKSLSIMMIDEAMEADRPQPGLPLDMTTSDPIVRRALLLLQQAL
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DAPPTLSTLAARLKVSPRTLERRFDAALNMTPFEAGKRIRLAQAERLLRQTQRSVTQIAQ
CCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCCEEHHHHHHHHHHHHHHHHHHHHH
DTGFSDVSHFIRVFKATYDITPENWRLKRTSSA
HCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure
MKHPDSAISSDRTRLRIGFILTRQFTICAFANFVDVLRLASDEGDRSRAILCNWRVLSAD
CCCCCCHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC
MTPVTSSSGVTVQPEERLGDPRRFDYIVVIGGLMGELEQVEPEYTAFLRRAAMARVPLIG
CCCCCCCCCCEECCHHHCCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCEEE
VCTGSFVLHAAGLLDGYRCCVSWFHHNDFLEQFDGLEPVSDQIFVVDRDRLTCSGGTSSA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCCHH
HLAAFLVDRHISKAAARKSLSIMMIDEAMEADRPQPGLPLDMTTSDPIVRRALLLLQQAL
HHHHHHHHHHHHHHHHHHCCEEEEEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DAPPTLSTLAARLKVSPRTLERRFDAALNMTPFEAGKRIRLAQAERLLRQTQRSVTQIAQ
CCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCCEEHHHHHHHHHHHHHHHHHHHHH
DTGFSDVSHFIRVFKATYDITPENWRLKRTSSA
HCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]