| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678978
Identifier: 110678978
GI number: 110678978
Start: 1610609
End: 1611172
Strand: Reverse
Name: 110678978
Synonym: RD1_1675
Alternate gene names: NA
Gene position: 1611172-1610609 (Counterclockwise)
Preceding gene: 110678981
Following gene: 110678977
Centisome position: 38.98
GC content: 64.36
Gene sequence:
>564_bases ATGTCCTGGACAGACGAACGGGTTGAACTGCTCAAGAAAATGTGGGGCGAAGGCCAGTCCGCAAGTCAGATCGCCAAGGA ACTGGGCGGTGTGACCCGTAACGCCGTGATCGGCAAAGTGCACAGGCTGGGTCTGTCAAACCGCGCCACGACCGGCACGA AGACCGAGACCAAAGCCAAGGCCGCGCCAAAAGCCGAGGCCAAGCCCAAGCCCGCGCCAAAACCGGCAGAACCGGCGGCA CAAGCGGCCCCCGAACCGGCGACGCCCAAGCCCCTGCCCTCCCGCAAACAGATTATCCCCGCAGGCCAGCCCCTGCCGCC GCAACCGTCCGCCAATGAAATCAGCCCGGAGGCCCTCGCCAAGGTGTCGGCCATCGAGAAGAAAGCGAAAAAGCTGACGC TGATGGAGTTGACCGAACGGACCTGCAAATGGCCCGTCGGCGACCCTGCGACCGACGATTTCTGGTTTTGCGGCCTGACG GTGCAGCAGGGCAAACCCTATTGCGAGGCGCATGTGGGCGTTGCCTTTCAGCCGATGTCGTCGCGCCGGGACCGCCGCCG CTGA
Upstream 100 bases:
>100_bases TCGCGGCTTGTATCTCCGGGTCCAGTCTCTAGAATAGAGGACTACGCTGACACGGTGGCGGTCCTGATCCTTGGGCCGCC TTTTGAATTGGGGAATGCTG
Downstream 100 bases:
>100_bases TACGGCCGGTGGCAAAGCGCCAGCGCCACCCTCCTGAAATATCGAAAACGCAAAGGTGAGTTGCGCGTGGCTTCGGGTCA GGTATGAACCGTTGGCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: Global Cell Cycle Regulator GcrA; GcrA Cell Cycle Regulator Superfamily; Cell Cycle Regulator GcrA; Gcra Cell Cycle Regulator
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MSWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRATTGTKTETKAKAAPKAEAKPKPAPKPAEPAA QAAPEPATPKPLPSRKQIIPAGQPLPPQPSANEISPEALAKVSAIEKKAKKLTLMELTERTCKWPVGDPATDDFWFCGLT VQQGKPYCEAHVGVAFQPMSSRRDRRR
Sequences:
>Translated_187_residues MSWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRATTGTKTETKAKAAPKAEAKPKPAPKPAEPAA QAAPEPATPKPLPSRKQIIPAGQPLPPQPSANEISPEALAKVSAIEKKAKKLTLMELTERTCKWPVGDPATDDFWFCGLT VQQGKPYCEAHVGVAFQPMSSRRDRRR >Mature_186_residues SWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRATTGTKTETKAKAAPKAEAKPKPAPKPAEPAAQ AAPEPATPKPLPSRKQIIPAGQPLPPQPSANEISPEALAKVSAIEKKAKKLTLMELTERTCKWPVGDPATDDFWFCGLTV QQGKPYCEAHVGVAFQPMSSRRDRRR
Specific function: Unknown
COG id: COG5352
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20252; Mature: 20120
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRATTGTKTETKAK CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH AAPKAEAKPKPAPKPAEPAAQAAPEPATPKPLPSRKQIIPAGQPLPPQPSANEISPEALA CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH KVSAIEKKAKKLTLMELTERTCKWPVGDPATDDFWFCGLTVQQGKPYCEAHVGVAFQPMS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEECCCCEEECCHH SRRDRRR HHHCCCC >Mature Secondary Structure SWTDERVELLKKMWGEGQSASQIAKELGGVTRNAVIGKVHRLGLSNRATTGTKTETKAK CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH AAPKAEAKPKPAPKPAEPAAQAAPEPATPKPLPSRKQIIPAGQPLPPQPSANEISPEALA CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH KVSAIEKKAKKLTLMELTERTCKWPVGDPATDDFWFCGLTVQQGKPYCEAHVGVAFQPMS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEECCCCEEECCHH SRRDRRR HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA