| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is opgH [H]
Identifier: 110678972
GI number: 110678972
Start: 1601464
End: 1603356
Strand: Reverse
Name: opgH [H]
Synonym: RD1_1668
Alternate gene names: 110678972
Gene position: 1603356-1601464 (Counterclockwise)
Preceding gene: 110678973
Following gene: 110678966
Centisome position: 38.79
GC content: 62.97
Gene sequence:
>1893_bases ATGAGCGACAACGGCAAAACCGCCTTCATGGCAATGCCCCGGCGCGCCCCGCTTGAGATGATCGCGCAGGACTTTGGCCG CCAGCCGGTCCACCATGCGCCTGCGCCGGACCGATCCGGAACCTCATTCTACTGGCGTCTTGCGCTTTTCGTGCCCGCAT TGATCGGCACCGTGCTGTTGATGCGCGGCATCTACGGATGGTTTTCGGAAACCGGCATGGCGGGCCTTGAATGGTTCCTG CTCAGCCTGATTGGCCTGACGTTCATATGGGTCAGCCTCTCAGTCAGCACGATTGGCATCGCCCTTGCTGGCCTGTTGGC GCGCGCCAGTGACGCGCAGCGTGTCAAAAGGGACGCAGCGCCCATGGATGTTGCCTTGCTGATGCCGATCTACAACGAAG CCACCAGCGATGTTTTCGGCAACGCGGCGGCGATGCTGGATGATCTGGCCCGCCAGAAAGCCCACCACCGTTATACGTTG TTCATCCTGTCCGACACGCGCGACCCACAAACCGCTGCGCGGGAAGAGCGCGCCTATGGCCTGCTGCAAGCCACGGCCCC TGCGGGCATCGGTGTGTATTACCGCCGCCGGGCCGAGAACACCGACAAGAAAGTCGGCAATCTGATGGACTGGATCACGG GCTGGGGTGCGGCGCATGACGCGATGGTTGTGCTGGACGCGGATAGTCTGATGACGGGACAGGCCATCGACCGCCTCGCC TATGAACTCAGCGCGGACCCGCAGGCCGCGTTGATCCAGACATGCCCGGTTCTGATCGGAGCGGAGACGCTTTTTGCGCG CCTGCAGCAGTTTTCAAACATCGCCTATGGCTGGTTGATGTCCGAAGGTCTGGCCAACTGGGCGAGAACTGAGGGCAATT ACTGGGGCCACAACGCGATCATTCGCACCCGCGCTTTCGCTGCCTGCGCCGGGTTGCCACGTCTGGCGCGCCGGGGGGGA CGTTCAGACCTGATATTCAGCCATGATTTCGTCGAAGCGGGCCTTTTGCGGCGCGCAGGCTGGCGTGTGCGTTTCATGCC GCGCCTGACCGGCAGCTTTGAAGAGACGCCCGGCACGCTGATCGATTATGTGCTGCGCGATCAACGCTGGTGTCGGGGCA ACCTGCAACACCTGCGGCTGCTGGGCACTGCCGGGCTGCACCCTGTCTCACGGTTCCACCTGCTGCACGGCGCGGTCAGT TATTTGCTGTCACCCGCATGGTTCGTGCTGCTCATCGTGTGGTCTTTGCTGGGCAAGGACCGCGATACCAATGTGATCCG CTACTTCAACGAGGCCAATCCGCTGTTTCCCGACTGGCCGCCCGCCATGAGCCACATCGATTCCGCAGTCTTTCTGGTGA TCATGTATGCCATGCTGCTCACCCCCAAACTGGTGGGGGCCGGCATCATCGCCACGCATCCCAAGGCCACGCGTCTTTAT GGGGGGCGACGTGCCTTCCTGTCGGCCTTTGGGGTCGAGGTGTTCTTGTCCATCGCCTACGCCCCGATCCTGATGATCCA GCAAACGCGCGCTGTCGTGCGCACGGCTATCGGGCGCGAGATGACATGGGCGGCACAGAACCGCACGGCGACGGCCTATC CGCTCAGGGACCTGTTGCGGTTTCACTGGATGGAAACAGTCATCGGTCTCGTGCTGACGGCGGGTCTTTTGTCGGGTCTG GTGTCCCTGTGGCTGATCCCGATTGCCGCCAGCCTGCTGTTGGCCGTACCGCTGTCTGCTGCCAGTGCCTTGCCCGTCGC GCGGTATCTGCCGGGCCCGCTGCGCATGCACAGCCCGCTCACGCTGCGCGAACCGGGCATCGTGCAGAATGCCCGGCGTA AACGGCTACAGCTTCTGGCGGTTCTTGACCGGCCCCATCACGCGGCGGAATAG
Upstream 100 bases:
>100_bases CTTTTGACCCGCAAGAAGCCGATCTGGTGGAATTCCGTGCCCAGTTGCGCCTGCAGGACGCGCCTTTCACAGAAATCTGG CTTTATCGCTGGACACGCGC
Downstream 100 bases:
>100_bases CGCCAAAGCGTCATGCGGAAAAGCTGAACCACGTAACGCTGCCTGAAATTAAGGATTTCAACGCGTTACGTGATACTTTA CGTTTCAGACTTTCCGTCAG
Product: glucosyltransferase MdoH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MSDNGKTAFMAMPRRAPLEMIAQDFGRQPVHHAPAPDRSGTSFYWRLALFVPALIGTVLLMRGIYGWFSETGMAGLEWFL LSLIGLTFIWVSLSVSTIGIALAGLLARASDAQRVKRDAAPMDVALLMPIYNEATSDVFGNAAAMLDDLARQKAHHRYTL FILSDTRDPQTAAREERAYGLLQATAPAGIGVYYRRRAENTDKKVGNLMDWITGWGAAHDAMVVLDADSLMTGQAIDRLA YELSADPQAALIQTCPVLIGAETLFARLQQFSNIAYGWLMSEGLANWARTEGNYWGHNAIIRTRAFAACAGLPRLARRGG RSDLIFSHDFVEAGLLRRAGWRVRFMPRLTGSFEETPGTLIDYVLRDQRWCRGNLQHLRLLGTAGLHPVSRFHLLHGAVS YLLSPAWFVLLIVWSLLGKDRDTNVIRYFNEANPLFPDWPPAMSHIDSAVFLVIMYAMLLTPKLVGAGIIATHPKATRLY GGRRAFLSAFGVEVFLSIAYAPILMIQQTRAVVRTAIGREMTWAAQNRTATAYPLRDLLRFHWMETVIGLVLTAGLLSGL VSLWLIPIAASLLLAVPLSAASALPVARYLPGPLRMHSPLTLREPGIVQNARRKRLQLLAVLDRPHHAAE
Sequences:
>Translated_630_residues MSDNGKTAFMAMPRRAPLEMIAQDFGRQPVHHAPAPDRSGTSFYWRLALFVPALIGTVLLMRGIYGWFSETGMAGLEWFL LSLIGLTFIWVSLSVSTIGIALAGLLARASDAQRVKRDAAPMDVALLMPIYNEATSDVFGNAAAMLDDLARQKAHHRYTL FILSDTRDPQTAAREERAYGLLQATAPAGIGVYYRRRAENTDKKVGNLMDWITGWGAAHDAMVVLDADSLMTGQAIDRLA YELSADPQAALIQTCPVLIGAETLFARLQQFSNIAYGWLMSEGLANWARTEGNYWGHNAIIRTRAFAACAGLPRLARRGG RSDLIFSHDFVEAGLLRRAGWRVRFMPRLTGSFEETPGTLIDYVLRDQRWCRGNLQHLRLLGTAGLHPVSRFHLLHGAVS YLLSPAWFVLLIVWSLLGKDRDTNVIRYFNEANPLFPDWPPAMSHIDSAVFLVIMYAMLLTPKLVGAGIIATHPKATRLY GGRRAFLSAFGVEVFLSIAYAPILMIQQTRAVVRTAIGREMTWAAQNRTATAYPLRDLLRFHWMETVIGLVLTAGLLSGL VSLWLIPIAASLLLAVPLSAASALPVARYLPGPLRMHSPLTLREPGIVQNARRKRLQLLAVLDRPHHAAE >Mature_629_residues SDNGKTAFMAMPRRAPLEMIAQDFGRQPVHHAPAPDRSGTSFYWRLALFVPALIGTVLLMRGIYGWFSETGMAGLEWFLL SLIGLTFIWVSLSVSTIGIALAGLLARASDAQRVKRDAAPMDVALLMPIYNEATSDVFGNAAAMLDDLARQKAHHRYTLF ILSDTRDPQTAAREERAYGLLQATAPAGIGVYYRRRAENTDKKVGNLMDWITGWGAAHDAMVVLDADSLMTGQAIDRLAY ELSADPQAALIQTCPVLIGAETLFARLQQFSNIAYGWLMSEGLANWARTEGNYWGHNAIIRTRAFAACAGLPRLARRGGR SDLIFSHDFVEAGLLRRAGWRVRFMPRLTGSFEETPGTLIDYVLRDQRWCRGNLQHLRLLGTAGLHPVSRFHLLHGAVSY LLSPAWFVLLIVWSLLGKDRDTNVIRYFNEANPLFPDWPPAMSHIDSAVFLVIMYAMLLTPKLVGAGIIATHPKATRLYG GRRAFLSAFGVEVFLSIAYAPILMIQQTRAVVRTAIGREMTWAAQNRTATAYPLRDLLRFHWMETVIGLVLTAGLLSGLV SLWLIPIAASLLLAVPLSAASALPVARYLPGPLRMHSPLTLREPGIVQNARRKRLQLLAVLDRPHHAAE
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) [H]
COG id: COG2943
COG function: function code M; Membrane glycosyltransferase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family. OpgH subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787287, Length=515, Percent_Identity=35.7281553398058, Blast_Score=277, Evalue=2e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 69737; Mature: 69606
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNGKTAFMAMPRRAPLEMIAQDFGRQPVHHAPAPDRSGTSFYWRLALFVPALIGTVLL CCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH MRGIYGWFSETGMAGLEWFLLSLIGLTFIWVSLSVSTIGIALAGLLARASDAQRVKRDAA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC PMDVALLMPIYNEATSDVFGNAAAMLDDLARQKAHHRYTLFILSDTRDPQTAAREERAYG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHH LLQATAPAGIGVYYRRRAENTDKKVGNLMDWITGWGAAHDAMVVLDADSLMTGQAIDRLA HHEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHH YELSADPQAALIQTCPVLIGAETLFARLQQFSNIAYGWLMSEGLANWARTEGNYWGHNAI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH IRTRAFAACAGLPRLARRGGRSDLIFSHDFVEAGLLRRAGWRVRFMPRLTGSFEETPGTL HHHHHHHHHHCCHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCHHH IDYVLRDQRWCRGNLQHLRLLGTAGLHPVSRFHLLHGAVSYLLSPAWFVLLIVWSLLGKD HHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RDTNVIRYFNEANPLFPDWPPAMSHIDSAVFLVIMYAMLLTPKLVGAGIIATHPKATRLY CCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHC GGRRAFLSAFGVEVFLSIAYAPILMIQQTRAVVRTAIGREMTWAAQNRTATAYPLRDLLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCHHHHHHHHH FHWMETVIGLVLTAGLLSGLVSLWLIPIAASLLLAVPLSAASALPVARYLPGPLRMHSPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC TLREPGIVQNARRKRLQLLAVLDRPHHAAE CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SDNGKTAFMAMPRRAPLEMIAQDFGRQPVHHAPAPDRSGTSFYWRLALFVPALIGTVLL CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH MRGIYGWFSETGMAGLEWFLLSLIGLTFIWVSLSVSTIGIALAGLLARASDAQRVKRDAA HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC PMDVALLMPIYNEATSDVFGNAAAMLDDLARQKAHHRYTLFILSDTRDPQTAAREERAYG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHH LLQATAPAGIGVYYRRRAENTDKKVGNLMDWITGWGAAHDAMVVLDADSLMTGQAIDRLA HHEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHH YELSADPQAALIQTCPVLIGAETLFARLQQFSNIAYGWLMSEGLANWARTEGNYWGHNAI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH IRTRAFAACAGLPRLARRGGRSDLIFSHDFVEAGLLRRAGWRVRFMPRLTGSFEETPGTL HHHHHHHHHHCCHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCEEEEHHHCCCCCCCCHHH IDYVLRDQRWCRGNLQHLRLLGTAGLHPVSRFHLLHGAVSYLLSPAWFVLLIVWSLLGKD HHHHHHCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RDTNVIRYFNEANPLFPDWPPAMSHIDSAVFLVIMYAMLLTPKLVGAGIIATHPKATRLY CCCCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHC GGRRAFLSAFGVEVFLSIAYAPILMIQQTRAVVRTAIGREMTWAAQNRTATAYPLRDLLR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCHHHHHHHHH FHWMETVIGLVLTAGLLSGLVSLWLIPIAASLLLAVPLSAASALPVARYLPGPLRMHSPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC TLREPGIVQNARRKRLQLLAVLDRPHHAAE CCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA