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The map label for this gene is deoD

Identifier: 110678940

GI number: 110678940

Start: 1572283

End: 1572987

Strand: Reverse

Name: deoD

Synonym: RD1_1634

Alternate gene names: 110678940

Gene position: 1572987-1572283 (Counterclockwise)

Preceding gene: 110678941

Following gene: 110678925

Centisome position: 38.06

GC content: 61.84

Gene sequence:

>705_bases
ATGACCATCCATATCGGTGCCCGCCCCGACCAGATTGCCGAAACCGTACTGATGCCGGGCGATCCTTACCGCGCCAGATG
GGCGGCGCAGACCTTTCTGGACGGCGCCGAACTGGTCAACGAAGTGCGCGGCATGCTGGGGTTCACCGGCACCTACAAAG
GCAACCGCGTGACCATCCAGGGCTCCGGCATGGGCATGCCCTCCCTGTCGATCTACGCCAATGAGCTGATCTCAAGCTAT
AACGCGCAAACCCTGATCCGCATCGGGTCCTGTGGTGGGATGCAGCCGCATGTGGCCGTGCGTGATGTGATCATTGCCAT
GTCCGCCACCACGATCACCTCGCCGTCTTCAGGGATTTTCCGTGAGGTGAATTTTGCGCCCACCGCGCATTACGATCTTT
TGGCCGCTGCTGTCACCGCCGCCAAGGCAAAAGGCACGCGCACCCATGTGGGCGGTATCTATTCATCGGATGTTTTTTAC
GCCGAACGCCCCGATCTGGACGAACAGATGGTGCGCCACGGTATCCTCGGGGTCGAAATGGAAGCCGCCGAACTCTACAC
GCTGGCGGCGCGTCACAACCGACGCGCGTTGGCCATACTCACCGTCAGCGACCACCTGCAGACCGGCGAGGCGCTCCCGG
CTGAGGACCGCGAACAGACCTTTGGCGATATGGTCGAAATCGCGCTGGAGGCCGCCTTCGCCTGA

Upstream 100 bases:

>100_bases
CACGCTGGCGGACCCTCAGGCGGTGGCGGCACAGTAGCTGATGGCTTGCACAGGGCAGTGAGGTGCCGTTAACTGCGCCG
AACTGCCAAAGGAGTCCTGC

Downstream 100 bases:

>100_bases
GACTATGGACCATGGGTCCGGTCATAGCTGTTCGCTGCCGGTGGGTTCCAACCTGCCAAAGCCTTCGGCGCGGGTTTGAA
CACCTCCACCAGCAGGGGAT

Product: purine nucleoside phosphorylase

Products: NA

Alternate protein names: PNP

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTIHIGARPDQIAETVLMPGDPYRARWAAQTFLDGAELVNEVRGMLGFTGTYKGNRVTIQGSGMGMPSLSIYANELISSY
NAQTLIRIGSCGGMQPHVAVRDVIIAMSATTITSPSSGIFREVNFAPTAHYDLLAAAVTAAKAKGTRTHVGGIYSSDVFY
AERPDLDEQMVRHGILGVEMEAAELYTLAARHNRRALAILTVSDHLQTGEALPAEDREQTFGDMVEIALEAAFA

Sequences:

>Translated_234_residues
MTIHIGARPDQIAETVLMPGDPYRARWAAQTFLDGAELVNEVRGMLGFTGTYKGNRVTIQGSGMGMPSLSIYANELISSY
NAQTLIRIGSCGGMQPHVAVRDVIIAMSATTITSPSSGIFREVNFAPTAHYDLLAAAVTAAKAKGTRTHVGGIYSSDVFY
AERPDLDEQMVRHGILGVEMEAAELYTLAARHNRRALAILTVSDHLQTGEALPAEDREQTFGDMVEIALEAAFA
>Mature_233_residues
TIHIGARPDQIAETVLMPGDPYRARWAAQTFLDGAELVNEVRGMLGFTGTYKGNRVTIQGSGMGMPSLSIYANELISSYN
AQTLIRIGSCGGMQPHVAVRDVIIAMSATTITSPSSGIFREVNFAPTAHYDLLAAAVTAAKAKGTRTHVGGIYSSDVFYA
ERPDLDEQMVRHGILGVEMEAAELYTLAARHNRRALAILTVSDHLQTGEALPAEDREQTFGDMVEIALEAAFA

Specific function: Cleavage Of Guanosine Or Inosine To Respective Bases And Sugar-1-Phosphate Molecules. [C]

COG id: COG0813

COG function: function code F; Purine-nucleoside phosphorylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family

Homologues:

Organism=Escherichia coli, GI1790844, Length=232, Percent_Identity=49.1379310344828, Blast_Score=237, Evalue=4e-64,
Organism=Escherichia coli, GI1790265, Length=246, Percent_Identity=30.8943089430894, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOD_ROSDO (Q169T2)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681947.1
- ProteinModelPortal:   Q169T2
- SMR:   Q169T2
- STRING:   Q169T2
- GeneID:   4197089
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1634
- NMPDR:   fig|375451.6.peg.1530
- eggNOG:   COG0813
- HOGENOM:   HBG617197
- OMA:   SFETHAF
- PhylomeDB:   Q169T2
- ProtClustDB:   PRK05819
- BioCyc:   RDEN375451:RD1_1634-MONOMER
- HAMAP:   MF_01627
- InterPro:   IPR004402
- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- PANTHER:   PTHR21234
- TIGRFAMs:   TIGR00107

Pfam domain/function: PF01048 PNP_UDP_1

EC number: =2.4.2.1

Molecular weight: Translated: 25188; Mature: 25057

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS01232 PNP_UDP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHIGARPDQIAETVLMPGDPYRARWAAQTFLDGAELVNEVRGMLGFTGTYKGNRVTIQ
CEEEECCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GSGMGMPSLSIYANELISSYNAQTLIRIGSCGGMQPHVAVRDVIIAMSATTITSPSSGIF
ECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCE
REVNFAPTAHYDLLAAAVTAAKAKGTRTHVGGIYSSDVFYAERPDLDEQMVRHGILGVEM
EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCEEECCCCCHHHHHHHCCCCCEEE
EAAELYTLAARHNRRALAILTVSDHLQTGEALPAEDREQTFGDMVEIALEAAFA
HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIHIGARPDQIAETVLMPGDPYRARWAAQTFLDGAELVNEVRGMLGFTGTYKGNRVTIQ
EEEECCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GSGMGMPSLSIYANELISSYNAQTLIRIGSCGGMQPHVAVRDVIIAMSATTITSPSSGIF
ECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCCE
REVNFAPTAHYDLLAAAVTAAKAKGTRTHVGGIYSSDVFYAERPDLDEQMVRHGILGVEM
EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCEEECCEEECCCCCHHHHHHHCCCCCEEE
EAAELYTLAARHNRRALAILTVSDHLQTGEALPAEDREQTFGDMVEIALEAAFA
HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA