| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yhaI [C]
Identifier: 110678916
GI number: 110678916
Start: 1554727
End: 1555233
Strand: Reverse
Name: yhaI [C]
Synonym: RD1_1610
Alternate gene names: 110678916
Gene position: 1555233-1554727 (Counterclockwise)
Preceding gene: 110678917
Following gene: 110678915
Centisome position: 37.63
GC content: 53.25
Gene sequence:
>507_bases ATGACCTTCACCCAATCCATCAAAACCTGCTTTCGAAAATACTTCACGTTCTCCGGCCGTGCATCGCGATCAGAATACTG GTGGTTTTTCCTGTTCACTATCTTGGGCGGTTTGTTTTTCGGTTTTATTGAGGGGTTCATCAACGGAGCATCGGGCACCC CCGACGGCCCGACCCTGCTGTCCGGAGCCTTCAACCTGGCTACTTTTGTTCCAACTCTCGCCGTTGGCTGGCGTCGCATG CACGACAGCGGGCGGTCGGGTGTCTATCTGTTTTATCCGTTGATCGCGATTGTTGGGCTATCCATTTTCATCGGTCTTTT TGGAGGCACTGAGCTTCTCACCAGCTCCGACCCTGCATCTTTATTTGAGGGTGCCTTCGGGATCATCGTGATCATTTCGC TGATCGTCGTAGCACTTTCGCCATTCATCGTAGTCTTCTGGCTCACTCGCCCGTCTCAACCCGGCCCCAACACCTACGGT CCCAACCCAAATGAGGTATCCCAATGA
Upstream 100 bases:
>100_bases GGGCAGTGCCCGAACCGAGGCTAAGGAAGCGAAGCGCCCGCCCCGTGAGGGCGGTTCGGGCGCTGCCCGGCGGTACCCGC CAGGCGGAAGGGTGCGCTCA
Downstream 100 bases:
>100_bases CCGACCATCCCGCCAACGACCAGTTCCATGCGTCCTCCTTCATGCAGGGGCACAACGCGGAATATCTCGAACAGATGTAT GCGCGCTATGCCAATGACCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MTFTQSIKTCFRKYFTFSGRASRSEYWWFFLFTILGGLFFGFIEGFINGASGTPDGPTLLSGAFNLATFVPTLAVGWRRM HDSGRSGVYLFYPLIAIVGLSIFIGLFGGTELLTSSDPASLFEGAFGIIVIISLIVVALSPFIVVFWLTRPSQPGPNTYG PNPNEVSQ
Sequences:
>Translated_168_residues MTFTQSIKTCFRKYFTFSGRASRSEYWWFFLFTILGGLFFGFIEGFINGASGTPDGPTLLSGAFNLATFVPTLAVGWRRM HDSGRSGVYLFYPLIAIVGLSIFIGLFGGTELLTSSDPASLFEGAFGIIVIISLIVVALSPFIVVFWLTRPSQPGPNTYG PNPNEVSQ >Mature_167_residues TFTQSIKTCFRKYFTFSGRASRSEYWWFFLFTILGGLFFGFIEGFINGASGTPDGPTLLSGAFNLATFVPTLAVGWRRMH DSGRSGVYLFYPLIAIVGLSIFIGLFGGTELLTSSDPASLFEGAFGIIVIISLIVVALSPFIVVFWLTRPSQPGPNTYGP NPNEVSQ
Specific function: Unknown
COG id: COG3152
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18376; Mature: 18245
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFTQSIKTCFRKYFTFSGRASRSEYWWFFLFTILGGLFFGFIEGFINGASGTPDGPTLL CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH SGAFNLATFVPTLAVGWRRMHDSGRSGVYLFYPLIAIVGLSIFIGLFGGTELLTSSDPAS HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHH LFEGAFGIIVIISLIVVALSPFIVVFWLTRPSQPGPNTYGPNPNEVSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TFTQSIKTCFRKYFTFSGRASRSEYWWFFLFTILGGLFFGFIEGFINGASGTPDGPTLL CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH SGAFNLATFVPTLAVGWRRMHDSGRSGVYLFYPLIAIVGLSIFIGLFGGTELLTSSDPAS HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHH LFEGAFGIIVIISLIVVALSPFIVVFWLTRPSQPGPNTYGPNPNEVSQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA