Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110678902

Identifier: 110678902

GI number: 110678902

Start: 1540407

End: 1542998

Strand: Direct

Name: 110678902

Synonym: RD1_1596

Alternate gene names: NA

Gene position: 1540407-1542998 (Clockwise)

Preceding gene: 110678901

Following gene: 110678905

Centisome position: 37.27

GC content: 62.15

Gene sequence:

>2592_bases
ATGGCGTCTTTTTCCCGGCATGATGCGGAAAAAACATTGAAATCAGTGCGATGGCCCCTGCGTTTGACGTGGATGGGGCT
GCTGACCGAAGCTGTCGTGCACAGTTTCTGGCCGTTGCTCAGTGTATGTCTTTTGGTCATGTCGGCGCTGATGCTGGGGC
TTCAGGACCTTGTTGGCGTGGAAATTGTCTGGGGATCGGCGGTTATTTCCGTACTGGCGGGTGTCGCGGCACTTGTTTAC
GCCCTCCGAAGTTTCCGCCTGCCAACTCGGGAGGACGCGATCCTGCGCCTTGATGCGAGCTTGCCCGGCAGGCCGCTGCA
GGCGCTGACGGACACGCAGACGATCGGTTCCGGCGATGCCGCCTCAACGGCTGTCTGGCGCGCACATCAAAAACGAATGG
CCGCGCGAGCACAATTGGCCAAACCCGTGCCGGCGGATCTGCAAACCCCGAAACGTGATCCCTACGCACTTCGCTATATG
GCGCTGTTGGCGTTTGGCATTGCATTGCTGTTTGGCTCGATCTGGCGGGTCGGCTCGGTGTCCGAAATGACCCCCGGCGG
GGCGGGCCTTGCCGCCGGACCGGTCTGGGAGGGGTGGGCCGAAAGCCCGCGCTACACCGGGCGGCCGACCATTTATCTCA
ACGATATCGACGCAGGCGAACTGGCGGTCCCGGCGGGCAGCCTGATCACCATGCGCATGTATGGCGAGATCGGCGCGCTG
ACCCTTACGGAAACCGTGTCCGGGCGCGCGGATGTTGCGGCAGTCTCGGATCCGGCGCAGGATTTCGTCGTCGTGCAGGA
TGGGGAGATCACCATCAGTGGCCCCGGCGGACGTAGCTGGCAAGTGGTCGTTATCCCGGATCAGCCACCGGAAATTGCGG
TTCTGTCGGATCCCAGTGCCTCTGCGATGGGCGAGATGACGTTGCCGTTTTATGCGGTCGATGATTACGCAGTAGAGGCC
GGAGAGGCGCGCTTTTCGCTTGATCTGGCCGCCGTTGATCGCCGCTATGGTCTGACGATTGAGCCTGAATCACGTCCCGA
ACTCATCGTGCCTTTGCCGATGCCGATCTCGGGCAGCAGGGCCGAATTCGAGGAAAACCTCATCGAAGATTTCTCGCAGC
ATCCATGGGCAAACCTGCCCGTGGCGGTCAGCCTGTCGGCGCTTGATGGTGCCGAGCAGCAGTTTGAAACGGAACCACGC
GCGATTGTCCTGCCGGGTCGGCGCTTTTTTGACCCGGTGGCGGCGGCCGTGATCGAGGCACGGCGTGATCTGTTGTGGTC
GCGTGCCAACGGGCCAACCATCGCGCAGGTCATGCGCGCTGTCTCTTACGAACCGCAGGAACTGTTTCGCAAAGAGACGG
ATGCACTGCGCCTGAGGCAGGTGATCCGGACGCTGGAGTTGCACGCAAAATATGGGATTACGGACGAAAAGCAGCAAGAG
CTTGCCGATGACATGTGGGACCTTGCGCTGATCCTCGAAGAGGGCGATCTGGCCGATGCGGCGGAACGGATGCGCCGGGC
GCAGGAGCGTCTCAACGAGGCGATCAAGAACGGCGCATCGGACGAGGAAATAGCCGAATTGATGCAGGAACTGCGTCGTG
CGACCGAGGATTATTTGCAGCAACTGTCGCGTCAGGCGCAACGCGATCAGCAGGAACAACAGCCCGGTCAGCAGGGCGAT
CAGCAAAATTCCATGCAGATGACGCAGGATGATCTGCAGCGCATGATGGACCGGATTCAGGAGTTGATGGAGCAAGGTCG
CATGGCCGAAGCCCAGCAAGCGCTGCAAGAGCTTCAGGAAATGATGGAGAACATGCGCGTCACCCAAGGCCAGCAAGGGC
AGGGCGGTCAAAGCCCGGGCGAACAAGCCATGGAGGGACTGTCAGAAACGCTGCGCGAGCAGCAGGGTCTGAGCGATCAG
GCGTTCCGCGATCTTCAGGAGCAATTCAATCCCAACGCGCAGGCCGGTGAAAATCAGGGTAATGAAGGGCGAAATGGCGG
TCAGGGGCGCGGCACCGAGCACGAAGGCGAGGGTCAGGGGCAAGGCGGTCAACAGGACGGACAAGCCCAGAATGGCCAGC
CGGGCGAAGGTGGTGAACAGGGCAGCATTGCCGACCGCCAGCAAGACTTGCGCAATGAGTTGAGCCGCCAGCAACAGAAC
CTGCCCGGTGCCGGGACCCCCGAAGGTGACGCTGCGCGCGATGCGCTGGATCGTGCCGGCCGTGCGATGGACGACGCGGA
GGATGCGCTGCGCCAGAATGATCTGGCGGAGGCGATCGACAATCAGGGACAGGCCATGGAAGCGCTGCGCGAGGGCATGC
GCGCTCTGGGCGAAATGATGGCCGAACAGCAGCAAAACGGCCAGCCCGGTCAGGGCACGCAACCGGGCGATCAGCGCGCC
GACAGCCGCGATCCCCTGGGACGCGAAGCAGGCAACTCCGGTGTGCAGGGCGATGACAGCCCGCTGGCGTTGAACGATGA
TGCCTATGGGCGTGCGCGCGAATTGCTGGACGAAATCCGCCGCAGATCAGGCGACACGGAACGGCCCGAGGTGGAGCGCG
ATTACCTCAACCGCTTGCTGGACAGGTTCTAG

Upstream 100 bases:

>100_bases
CCCACGTCCAACCTTTGACGAAATGATAAAACGAGATACCATTCCTACTTGGCTCTGATCGTGCGCGTGCAAAGGGGCCA
TTGGCAACGGAGCATGACAT

Downstream 100 bases:

>100_bases
GGCGTTTGACGAAAAACCCATGGCATGGATTGCTGTGTGAAAAGAAAGAGGTCGATGCGTTGTTTCAGGCGCTCTAGAGC
GTCTGACGAAATACCTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 863; Mature: 862

Protein sequence:

>863_residues
MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVY
ALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYM
ALLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL
TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEA
GEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPR
AIVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE
LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGD
QQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQ
AFRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN
LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRA
DSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF

Sequences:

>Translated_863_residues
MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVY
ALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYM
ALLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL
TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEA
GEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPR
AIVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE
LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGD
QQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQ
AFRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN
LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRA
DSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF
>Mature_862_residues
ASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVYA
LRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMA
LLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGALT
LTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEAG
EARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRA
IVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQEL
ADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGDQ
QNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQA
FRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQNL
PGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRAD
SRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94656; Mature: 94525

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGV
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVWGSAVISVLAGVAALVYALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCH
ASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMALLAFGIALLFGSIWRVGSV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCE
TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSA
EEHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC
SAMGEMTLPFYAVDDYAVEAGEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSR
HHCCCCCCCEEECCHHHHHCCCCCEEEHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCH
AEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRAIVLPGRRFFDPVAAAVIEA
HHHHHHHHHHHHHCCCCCCCCEEEEHHHCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHH
RRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE
HHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QLSRQAQRDQQEQQPGQQGDQQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQAFRDLQEQFNPNAQAGENQG
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
NEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMM
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AEQQQNGQPGQGTQPGDQRADSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIR
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
RRSGDTERPEVERDYLNRLLDRF
HHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVWGSAVISVLAGVAALVYALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCH
ASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMALLAFGIALLFGSIWRVGSV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCE
TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSA
EEHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC
SAMGEMTLPFYAVDDYAVEAGEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSR
HHCCCCCCCEEECCHHHHHCCCCCEEEHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCH
AEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRAIVLPGRRFFDPVAAAVIEA
HHHHHHHHHHHHHCCCCCCCCEEEEHHHCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHH
RRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE
HHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQ
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QLSRQAQRDQQEQQPGQQGDQQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
MMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQAFRDLQEQFNPNAQAGENQG
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC
NEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMM
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AEQQQNGQPGQGTQPGDQRADSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIR
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
RRSGDTERPEVERDYLNRLLDRF
HHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA