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The map label for this gene is nirS [H]

Identifier: 110678872

GI number: 110678872

Start: 1488045

End: 1489742

Strand: Direct

Name: nirS [H]

Synonym: RD1_1565

Alternate gene names: 110678872

Gene position: 1488045-1489742 (Clockwise)

Preceding gene: 110678863

Following gene: 110678873

Centisome position: 36.0

GC content: 59.42

Gene sequence:

>1698_bases
TTGTCGCTGTCTGCCACATTGGCGTTCGCACAGGACAAGCCTGCGGATCACGGCGATGATGCGTCCGCTGCCTACCAGCC
GTCCCTGACAACACTGGGTCAGATTCAGGTCGAAATTCCGGGTCGCAAGCCCGGTGATCCGGTCATGACGCCTAGCGAAT
ATCAGGATGCGAACACGATCTATTTCCAGCGCTGTGCGGGCTGCCACGGGGTTCTGCGCAAAGGCGCGACGGGCAAGGCG
CTGACCACAGACATCACACGTCCGAACGGGTTTGAATACCTGCGCGACTTCATCACCTATGGCTCGCCTGCGGGCATGCC
CAACTGGGGCACCTCGGGCGACATGACCGAAGAGCAGGTCGATGCCATGGCGCGGTATCTGCTGCTGGAGCCCGCTGTGC
CGCCGGAATGGGGCATGGCGGAGATGCGCGACAGCTGGAAAGTGATCGTCGCCCCCGAAGACCGGCCCACCGAAAAGATG
AACGACATCGACATCGACAACCTGTTCTCGGTCACGCTGCGGGATGCGGGCGAGATCGCGCTGATCGACGGCGCGAGCTA
CGAGATCAAGACGATCATCGAAACCGGCTACGCGGTTCACATCAGCCGGATTTCCGCATCGGGCCGCTATCTCTTTGTGA
TCGGTCGGGACGCCAAGGTCGTGATGATTGATTTGTGGATGGAAACACCCGGTCCGGTGGCTGAAATCAAGGTCGGATCC
GAGGCGCGGTCGGTCGAGACTTCGAAATTCGAAGGATACGAGGATCAATACGCCATCGCCGGGGCCTATTGGCCGCCACA
ATTCGTCATCATGGACGGTGACACGCTGGAGCCACTGCGCATCAAATCCACGCGCGGCATGACCTATGACGAGCAGGATT
TCCACCCCGAACCCCGCGTCGCGGCGATCCTCGGATCACACTACAAGCCCGAGTTCCTTGTGAACGTGAAAGAAACCGGC
AAGATCATGATGGTGGATTATTCCGACATCGACGCGCTGAAAATCACTGAGATCAACGCGGAGCGCTTCCTGCATGATGG
CGGTCTGGACAGCACGCAGCGCTACTTCCTGACGGCGGCGAATGCCCGTGGCAAGATCGTCGTGATCGACACCAAGGAAA
GCAAGAAGGTCGCCGTGATCGAGACCGAAGGCGAGACACCGCACCCCGGTCGTGGCGCCAATATCAACCACCCTACATAC
GGACCCGTGTGGGCAACATCGCACCTTGGGGATGATACGGTTGCATTGATCGGGACAGACCCCGAAGGCAACCCGGATCA
CGCCTGGAAAATGGTGCAGCAGCTTTACGCACTGGGTGGTGGGTCGCTCTTCGTGAAATCGCATCCGACGTCGAACCACC
TCTATGTGGATGCGACGCTGAACCCGGATGCGGAAACGTCGGGCTCGGTCGCGGTCTTCAAGATCGACGAATTGGGTCAG
GAAGAGCCGGAATACACCGTTCTGCCGCTGGTTGAATGGGCCGGGATTGCCGAAGGACAGCCCCGCGTTGTGCAGGGCGA
GTTCAATCAGGCCGGTAACGAGATCTGGTTCTCAATCTGGAACGCCGCTGATCTGGAATCGGCCATCGTTGTGGTCGACG
ACAAGACCCTCGAAATGAAGCACGTCATCAAGGACGAACGCCTGGTCACACCGACCGGCAAGTTCAACGTCTTCAACACC
CGCGCGGATGTCTACTGA

Upstream 100 bases:

>100_bases
CGCCTGCATCCGTCAGCCTTGGACGTATCGAATTTTCTGCAATTGGAGCCGATATATGTCCCTATCCATTCTCACACGTT
CTGTTGCGGTCAGCGCGCTG

Downstream 100 bases:

>100_bases
CATCTTTTGCGCAAACCGGGCGCGGCAGGACTCTCCCCCCTGCCGCGCTTTTTCCAACACTGTGGCCCCAAAATGCAACT
GAACTGGTAAGGACTTGAAA

Product: nitrite reductase

Products: NA

Alternate protein names: Cytochrome cd1; Cytochrome oxidase; Hydroxylamine reductase [H]

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MSLSATLAFAQDKPADHGDDASAAYQPSLTTLGQIQVEIPGRKPGDPVMTPSEYQDANTIYFQRCAGCHGVLRKGATGKA
LTTDITRPNGFEYLRDFITYGSPAGMPNWGTSGDMTEEQVDAMARYLLLEPAVPPEWGMAEMRDSWKVIVAPEDRPTEKM
NDIDIDNLFSVTLRDAGEIALIDGASYEIKTIIETGYAVHISRISASGRYLFVIGRDAKVVMIDLWMETPGPVAEIKVGS
EARSVETSKFEGYEDQYAIAGAYWPPQFVIMDGDTLEPLRIKSTRGMTYDEQDFHPEPRVAAILGSHYKPEFLVNVKETG
KIMMVDYSDIDALKITEINAERFLHDGGLDSTQRYFLTAANARGKIVVIDTKESKKVAVIETEGETPHPGRGANINHPTY
GPVWATSHLGDDTVALIGTDPEGNPDHAWKMVQQLYALGGGSLFVKSHPTSNHLYVDATLNPDAETSGSVAVFKIDELGQ
EEPEYTVLPLVEWAGIAEGQPRVVQGEFNQAGNEIWFSIWNAADLESAIVVVDDKTLEMKHVIKDERLVTPTGKFNVFNT
RADVY

Sequences:

>Translated_565_residues
MSLSATLAFAQDKPADHGDDASAAYQPSLTTLGQIQVEIPGRKPGDPVMTPSEYQDANTIYFQRCAGCHGVLRKGATGKA
LTTDITRPNGFEYLRDFITYGSPAGMPNWGTSGDMTEEQVDAMARYLLLEPAVPPEWGMAEMRDSWKVIVAPEDRPTEKM
NDIDIDNLFSVTLRDAGEIALIDGASYEIKTIIETGYAVHISRISASGRYLFVIGRDAKVVMIDLWMETPGPVAEIKVGS
EARSVETSKFEGYEDQYAIAGAYWPPQFVIMDGDTLEPLRIKSTRGMTYDEQDFHPEPRVAAILGSHYKPEFLVNVKETG
KIMMVDYSDIDALKITEINAERFLHDGGLDSTQRYFLTAANARGKIVVIDTKESKKVAVIETEGETPHPGRGANINHPTY
GPVWATSHLGDDTVALIGTDPEGNPDHAWKMVQQLYALGGGSLFVKSHPTSNHLYVDATLNPDAETSGSVAVFKIDELGQ
EEPEYTVLPLVEWAGIAEGQPRVVQGEFNQAGNEIWFSIWNAADLESAIVVVDDKTLEMKHVIKDERLVTPTGKFNVFNT
RADVY
>Mature_564_residues
SLSATLAFAQDKPADHGDDASAAYQPSLTTLGQIQVEIPGRKPGDPVMTPSEYQDANTIYFQRCAGCHGVLRKGATGKAL
TTDITRPNGFEYLRDFITYGSPAGMPNWGTSGDMTEEQVDAMARYLLLEPAVPPEWGMAEMRDSWKVIVAPEDRPTEKMN
DIDIDNLFSVTLRDAGEIALIDGASYEIKTIIETGYAVHISRISASGRYLFVIGRDAKVVMIDLWMETPGPVAEIKVGSE
ARSVETSKFEGYEDQYAIAGAYWPPQFVIMDGDTLEPLRIKSTRGMTYDEQDFHPEPRVAAILGSHYKPEFLVNVKETGK
IMMVDYSDIDALKITEINAERFLHDGGLDSTQRYFLTAANARGKIVVIDTKESKKVAVIETEGETPHPGRGANINHPTYG
PVWATSHLGDDTVALIGTDPEGNPDHAWKMVQQLYALGGGSLFVKSHPTSNHLYVDATLNPDAETSGSVAVFKIDELGQE
EPEYTVLPLVEWAGIAEGQPRVVQGEFNQAGNEIWFSIWNAADLESAIVVVDDKTLEMKHVIKDERLVTPTGKFNVFNTR
ADVY

Specific function: Inactivation of this cytochrome oxidase results in the loss of nitrite and nitric oxide reductase activities, but not of nitrous oxide reductase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: =1.7.2.1; =1.7.99.1 [H]

Molecular weight: Translated: 62189; Mature: 62058

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSATLAFAQDKPADHGDDASAAYQPSLTTLGQIQVEIPGRKPGDPVMTPSEYQDANTI
CCCEEEEEEECCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEE
YFQRCAGCHGVLRKGATGKALTTDITRPNGFEYLRDFITYGSPAGMPNWGTSGDMTEEQV
EEEHHCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
DAMARYLLLEPAVPPEWGMAEMRDSWKVIVAPEDRPTEKMNDIDIDNLFSVTLRDAGEIA
HHHHHHHEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE
LIDGASYEIKTIIETGYAVHISRISASGRYLFVIGRDAKVVMIDLWMETPGPVAEIKVGS
EEECCCEEEEEEEECCEEEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCEEEEEECC
EARSVETSKFEGYEDQYAIAGAYWPPQFVIMDGDTLEPLRIKSTRGMTYDEQDFHPEPRV
CCCCCCCHHCCCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCE
AAILGSHYKPEFLVNVKETGKIMMVDYSDIDALKITEINAERFLHDGGLDSTQRYFLTAA
EEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECHHHHEECCCCCCCCEEEEEEC
NARGKIVVIDTKESKKVAVIETEGETPHPGRGANINHPTYGPVWATSHLGDDTVALIGTD
CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
PEGNPDHAWKMVQQLYALGGGSLFVKSHPTSNHLYVDATLNPDAETSGSVAVFKIDELGQ
CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEHHCCC
EEPEYTVLPLVEWAGIAEGQPRVVQGEFNQAGNEIWFSIWNAADLESAIVVVDDKTLEMK
CCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHH
HVIKDERLVTPTGKFNVFNTRADVY
HHHCCCEEECCCCCEEEEECCCCCC
>Mature Secondary Structure 
SLSATLAFAQDKPADHGDDASAAYQPSLTTLGQIQVEIPGRKPGDPVMTPSEYQDANTI
CCEEEEEEECCCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEE
YFQRCAGCHGVLRKGATGKALTTDITRPNGFEYLRDFITYGSPAGMPNWGTSGDMTEEQV
EEEHHCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
DAMARYLLLEPAVPPEWGMAEMRDSWKVIVAPEDRPTEKMNDIDIDNLFSVTLRDAGEIA
HHHHHHHEECCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE
LIDGASYEIKTIIETGYAVHISRISASGRYLFVIGRDAKVVMIDLWMETPGPVAEIKVGS
EEECCCEEEEEEEECCEEEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCEEEEEECC
EARSVETSKFEGYEDQYAIAGAYWPPQFVIMDGDTLEPLRIKSTRGMTYDEQDFHPEPRV
CCCCCCCHHCCCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCE
AAILGSHYKPEFLVNVKETGKIMMVDYSDIDALKITEINAERFLHDGGLDSTQRYFLTAA
EEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECHHHHEECCCCCCCCEEEEEEC
NARGKIVVIDTKESKKVAVIETEGETPHPGRGANINHPTYGPVWATSHLGDDTVALIGTD
CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECC
PEGNPDHAWKMVQQLYALGGGSLFVKSHPTSNHLYVDATLNPDAETSGSVAVFKIDELGQ
CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEHHCCC
EEPEYTVLPLVEWAGIAEGQPRVVQGEFNQAGNEIWFSIWNAADLESAIVVVDDKTLEMK
CCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHH
HVIKDERLVTPTGKFNVFNTRADVY
HHHCCCEEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]