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The map label for this gene is cycA

Identifier: 110678870

GI number: 110678870

Start: 1485499

End: 1485876

Strand: Reverse

Name: cycA

Synonym: RD1_1563

Alternate gene names: NA

Gene position: 1485876-1485499 (Counterclockwise)

Preceding gene: 110678871

Following gene: 110678869

Centisome position: 35.95

GC content: 59.52

Gene sequence:

>378_bases
ATGTTCCAGAAACTCACAGCCGGCCTGCTGGCCCTGACCCTCGCGGCCCCCGCCTTCGCCTCGGGCGACCCTGCGAGCGG
CGAAAAGGTCTTTCGCAAATGCAAAGCCTGTCACGCCGTGGGCGAGGACGCCAAGAACAAGGTGGGCCCGACGTTGAACG
GCATCATGGGGGCCGCTGCGGGGGCCAATCCTGATTTCAAATATTCGGATGCGTTGATGACGATGGCCGCTGACGGTCTA
GTCTGGACCGAAGAGGAGATGGCGGCCTTTCTCAAGAAACCCAAGGAATACATGCCCAAGACCAAGATGAGCTTTGCGGG
CCTTCGGAAAGACGACGATATCGCGGATGTCATCGCCTATCTCGCGACCTTCAACTGA

Upstream 100 bases:

>100_bases
TCTGTCTTCGCTGCCAGATGATCTTTCACGAGCCGCACACCTGTACGGTTCTCAAACGTCGCAATCGCGCGGCATAACTC
TGATCTGAAAGGACAAATTC

Downstream 100 bases:

>100_bases
GCCCAGCTTGACTTTTGTTAAGGCGGCAACGCGCCGCCTTAACCATCGTGTTTTCATAGGCCTGCTATCAAAAGGAGCAA
AGGATGCGTGACGTTCTCAC

Product: cytochrome c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MFQKLTAGLLALTLAAPAFASGDPASGEKVFRKCKACHAVGEDAKNKVGPTLNGIMGAAAGANPDFKYSDALMTMAADGL
VWTEEEMAAFLKKPKEYMPKTKMSFAGLRKDDDIADVIAYLATFN

Sequences:

>Translated_125_residues
MFQKLTAGLLALTLAAPAFASGDPASGEKVFRKCKACHAVGEDAKNKVGPTLNGIMGAAAGANPDFKYSDALMTMAADGL
VWTEEEMAAFLKKPKEYMPKTKMSFAGLRKDDDIADVIAYLATFN
>Mature_125_residues
MFQKLTAGLLALTLAAPAFASGDPASGEKVFRKCKACHAVGEDAKNKVGPTLNGIMGAAAGANPDFKYSDALMTMAADGL
VWTEEEMAAFLKKPKEYMPKTKMSFAGLRKDDDIADVIAYLATFN

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=101, Percent_Identity=40.5940594059406, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17539604, Length=102, Percent_Identity=44.1176470588235, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17566554, Length=110, Percent_Identity=40, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=108, Percent_Identity=37.962962962963, Blast_Score=89, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=104, Percent_Identity=38.4615384615385, Blast_Score=85, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17137204, Length=106, Percent_Identity=43.3962264150943, Blast_Score=94, Evalue=3e-20,
Organism=Drosophila melanogaster, GI17137228, Length=104, Percent_Identity=42.3076923076923, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13283; Mature: 13283

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQKLTAGLLALTLAAPAFASGDPASGEKVFRKCKACHAVGEDAKNKVGPTLNGIMGAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCC
GANPDFKYSDALMTMAADGLVWTEEEMAAFLKKPKEYMPKTKMSFAGLRKDDDIADVIAY
CCCCCCCHHHHHHHHHHCCCEECHHHHHHHHHCCHHHCCCHHHHHHCCCCCCCHHHHHHH
LATFN
HHHCC
>Mature Secondary Structure
MFQKLTAGLLALTLAAPAFASGDPASGEKVFRKCKACHAVGEDAKNKVGPTLNGIMGAAA
CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCC
GANPDFKYSDALMTMAADGLVWTEEEMAAFLKKPKEYMPKTKMSFAGLRKDDDIADVIAY
CCCCCCCHHHHHHHHHHCCCEECHHHHHHHHHCCHHHCCCHHHHHHCCCCCCCHHHHHHH
LATFN
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA