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The map label for this gene is hbaR [C]

Identifier: 110678862

GI number: 110678862

Start: 1478704

End: 1479438

Strand: Direct

Name: hbaR [C]

Synonym: RD1_1554

Alternate gene names: 110678862

Gene position: 1478704-1479438 (Clockwise)

Preceding gene: 110678860

Following gene: 110678863

Centisome position: 35.78

GC content: 55.37

Gene sequence:

>735_bases
ATGAGAACCATGTTTGAGATCGCGGGGCGTGCCCCAATATTTCGGCACGTGCCCCCGCCGGATTTGGAGCGTTTACTGCA
AAGATCTTCTGTCAGACAGTTGGATCGTGGTGCATGCGTGTATCTGCAGGGCGAAGAAGCGCATAGCCTTTTTGTGGTTC
TCGAAGGATGGGTGAAAACCTACCGCATGACGCCCTGCGGCAACGAAGCCGTCGTTGGTATCTTTACCAAGTCCGACAGT
TTCGGAGAAGAAGCCGCGCTTGGAAATCAGAACTTCGTGGCCGGGGCCGAGGCCGTGTCGCAAGGCATCGTGTTGCAGAT
TGATGCACAGGTTCTGACGCAGGCGCTGTCCGGGGATATGGTACTGTGTCAGTCAGTGCTGGCCGGTGCGATGGAAAGCA
ACCGCTGTCTGGTGGAACATGTCGAGCAGCTGAAGTCCCATACGGGCGGGCAGCGCATCGCTGATTTCCTGATTTCGCTT
TGTGGGGATAAAAGCGGCAACTGCACCGTGATCCTGCCTTATGACAAAGTGCTGATTGCCGCCTGGCTCGGCATGAAACC
GGAATCCCTGTCCCGCGCCTTTCGGCGTCTCAAGGCATATGGCGTGACGATCCAGAAAGATCATGCCATTATCGAGTCAG
TCGAACGGCTGGCCCATTATGCAGATGAAGACCCGGCCGAATCCTGGAGTGCGAAAAATGACTGCAAAGCTGAACGCTGT
ATTGGAAGCAATTGA

Upstream 100 bases:

>100_bases
ACATTTAGGTTAGATTGCACGGCGTTTTTCTACTCTCAAGGGAATCGCCAGACGACGCGTCGCTAGCCACCTCGCTTTGG
AAGCAATAGAAAGAAATGAA

Downstream 100 bases:

>100_bases
TGCGGCCAATCGCGCCGATCCGGTGCAGGAGCCTGATGACGCTGGCGTAGATCAACCCGAGGCTTATCTTTACGGGCTGC
GCATGACCTCTGAACTGGAC

Product: transcriptional activator, putative

Products: NA

Alternate protein names: Crp/FNR Family Transcriptional Regulator; Transcriptional Activator FtrB; Crp/Fnr Family Transcriptional Regulator; Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Regulator Of Biofilm Formation Fnr Family; Transcriptional Regulator Dnr; Transcriptional Regulator DnrS; CRP Family Transcriptional Regulator; Crp Family Transcriptional Regulator; Transcriptional Regulator Dnr Type; Transcriptional Activator; Crp-Like Transcriptional Regulator; Regulatory Protein; Response Regulator Receiver; Fnr-Like Transcriptional Activator; Crp Family Regulatory Protein; DNR Protein; Transcriptional Regulator Dnr-Type; Fnr-Like Regulatory Protein; Transcription Regulator Protein Crp/Fnr Family; FNR-Like Transcriptional Regulator; CAMP-Bindin Transcriptional Regulator; Transcriptional Regulator CAP/Crp Family; Transcriptional Regulator Dnr/Nnr Type

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRTMFEIAGRAPIFRHVPPPDLERLLQRSSVRQLDRGACVYLQGEEAHSLFVVLEGWVKTYRMTPCGNEAVVGIFTKSDS
FGEEAALGNQNFVAGAEAVSQGIVLQIDAQVLTQALSGDMVLCQSVLAGAMESNRCLVEHVEQLKSHTGGQRIADFLISL
CGDKSGNCTVILPYDKVLIAAWLGMKPESLSRAFRRLKAYGVTIQKDHAIIESVERLAHYADEDPAESWSAKNDCKAERC
IGSN

Sequences:

>Translated_244_residues
MRTMFEIAGRAPIFRHVPPPDLERLLQRSSVRQLDRGACVYLQGEEAHSLFVVLEGWVKTYRMTPCGNEAVVGIFTKSDS
FGEEAALGNQNFVAGAEAVSQGIVLQIDAQVLTQALSGDMVLCQSVLAGAMESNRCLVEHVEQLKSHTGGQRIADFLISL
CGDKSGNCTVILPYDKVLIAAWLGMKPESLSRAFRRLKAYGVTIQKDHAIIESVERLAHYADEDPAESWSAKNDCKAERC
IGSN
>Mature_244_residues
MRTMFEIAGRAPIFRHVPPPDLERLLQRSSVRQLDRGACVYLQGEEAHSLFVVLEGWVKTYRMTPCGNEAVVGIFTKSDS
FGEEAALGNQNFVAGAEAVSQGIVLQIDAQVLTQALSGDMVLCQSVLAGAMESNRCLVEHVEQLKSHTGGQRIADFLISL
CGDKSGNCTVILPYDKVLIAAWLGMKPESLSRAFRRLKAYGVTIQKDHAIIESVERLAHYADEDPAESWSAKNDCKAERC
IGSN

Specific function: Global Transcription Factor That Controls The Expression Of Over 100 Target Genes In Response To Anoxia. It Facilitates The Adaptation To Anaerobic Growth Conditions By Regulating The Expression Of Gene Products That Are Involved In Anaerobic Energy Metab

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26742; Mature: 26742

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTMFEIAGRAPIFRHVPPPDLERLLQRSSVRQLDRGACVYLQGEEAHSLFVVLEGWVKT
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHH
YRMTPCGNEAVVGIFTKSDSFGEEAALGNQNFVAGAEAVSQGIVLQIDAQVLTQALSGDM
EECCCCCCCEEEEEEECCCCCCCHHHCCCCCCCHHHHHHHCCEEEEECHHHHHHHHCCCH
VLCQSVLAGAMESNRCLVEHVEQLKSHTGGQRIADFLISLCGDKSGNCTVILPYDKVLIA
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
AWLGMKPESLSRAFRRLKAYGVTIQKDHAIIESVERLAHYADEDPAESWSAKNDCKAERC
HHHCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHC
IGSN
CCCC
>Mature Secondary Structure
MRTMFEIAGRAPIFRHVPPPDLERLLQRSSVRQLDRGACVYLQGEEAHSLFVVLEGWVKT
CCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHHH
YRMTPCGNEAVVGIFTKSDSFGEEAALGNQNFVAGAEAVSQGIVLQIDAQVLTQALSGDM
EECCCCCCCEEEEEEECCCCCCCHHHCCCCCCCHHHHHHHCCEEEEECHHHHHHHHCCCH
VLCQSVLAGAMESNRCLVEHVEQLKSHTGGQRIADFLISLCGDKSGNCTVILPYDKVLIA
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH
AWLGMKPESLSRAFRRLKAYGVTIQKDHAIIESVERLAHYADEDPAESWSAKNDCKAERC
HHHCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHC
IGSN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA