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The map label for this gene is ccdA [H]

Identifier: 110678821

GI number: 110678821

Start: 1433231

End: 1433968

Strand: Direct

Name: ccdA [H]

Synonym: RD1_1509

Alternate gene names: 110678821

Gene position: 1433231-1433968 (Clockwise)

Preceding gene: 110678817

Following gene: 110678822

Centisome position: 34.68

GC content: 58.54

Gene sequence:

>738_bases
ATGGATATCACCTTTCTGGGCGCTGCCCTTGCCGGTTTGTTGTCGTTTCTGTCCCCCTGTATCCTGCCGATGGTGCCTTT
TTATCTGAGTTATCTTGCCGGTGTTGGCATGAACCAGATTTCCGCCGACGCACAGATTGATGCCCGCACACGCACGCGCG
CCGTTCTGGCGGCCTGTTGCTTTGCCGCAGGTGTGATCACGATCTTTGTGGGCCTTGGCGCCGCGGCAACGCTGTTCGGG
CAGGTCGTGCGCGACTATTTCGACATCCTGCGCTGGATCGCTGCGGCGATCATTATCGCGATGGGCCTGCATTTTCTGGG
CGTGATCCGGATCGGCGTTTTGTACCGACAACTGCGTACGGATACCGGCGGGGCGTTGAGTGTCAGCTATGCAGGTGCCT
ATGTGATCGGCCTTGCCTTTGCCTTTGGCTGGACGCCCTGTGTCGGGCCGGTCCTTGCGGCCATTCTGTTCACGGCAGCG
GGGGCTGATACGGCATCGACGGGTGCCTGGCTGCTGTTCGTCTATGGTGTGGGCATGACTGCGCCCTTTGTGCTGGCGGC
CTTGTTTATCGCGCCCTTCATGCGCTGGATGCACCGGTTTCGCCGTCATTTGGGGCGGATTGAAAAGGCGATGGGGGTGA
TGCTGATCGTCTTTGGCCTGCTGATCGCGACAAACTCAATGAATTACATCGCACTGCTGATGCTGGAGGTCTTTCCAAAC
TTTGGCGTGCTTGGATAA

Upstream 100 bases:

>100_bases
CGAAAAAAGGAGGGCGCGAAGGAACATGTCAAATTGACCTTTAATCTACAAATAACGTAATATGAATATGTGAATAATAC
AAGGCTCGGGCGTTGTCATG

Downstream 100 bases:

>100_bases
AGGGGAGGAAACCTCATGAGAAAACTGTTCACTGCATGTGTTGCACTGGTCATAATGGCCACGGGGGCTGTGGCTGCAAA
TCTGGGGGATGACGGGCTGC

Product: cytochrome c biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDITFLGAALAGLLSFLSPCILPMVPFYLSYLAGVGMNQISADAQIDARTRTRAVLAACCFAAGVITIFVGLGAAATLFG
QVVRDYFDILRWIAAAIIIAMGLHFLGVIRIGVLYRQLRTDTGGALSVSYAGAYVIGLAFAFGWTPCVGPVLAAILFTAA
GADTASTGAWLLFVYGVGMTAPFVLAALFIAPFMRWMHRFRRHLGRIEKAMGVMLIVFGLLIATNSMNYIALLMLEVFPN
FGVLG

Sequences:

>Translated_245_residues
MDITFLGAALAGLLSFLSPCILPMVPFYLSYLAGVGMNQISADAQIDARTRTRAVLAACCFAAGVITIFVGLGAAATLFG
QVVRDYFDILRWIAAAIIIAMGLHFLGVIRIGVLYRQLRTDTGGALSVSYAGAYVIGLAFAFGWTPCVGPVLAAILFTAA
GADTASTGAWLLFVYGVGMTAPFVLAALFIAPFMRWMHRFRRHLGRIEKAMGVMLIVFGLLIATNSMNYIALLMLEVFPN
FGVLG
>Mature_245_residues
MDITFLGAALAGLLSFLSPCILPMVPFYLSYLAGVGMNQISADAQIDARTRTRAVLAACCFAAGVITIFVGLGAAATLFG
QVVRDYFDILRWIAAAIIIAMGLHFLGVIRIGVLYRQLRTDTGGALSVSYAGAYVIGLAFAFGWTPCVGPVLAAILFTAA
GADTASTGAWLLFVYGVGMTAPFVLAALFIAPFMRWMHRFRRHLGRIEKAMGVMLIVFGLLIATNSMNYIALLMLEVFPN
FGVLG

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 26163; Mature: 26163

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCC
>Mature Secondary Structure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CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]