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The map label for this gene is rnpA [H]

Identifier: 110678775

GI number: 110678775

Start: 1386268

End: 1386681

Strand: Reverse

Name: rnpA [H]

Synonym: RD1_1459

Alternate gene names: 110678775

Gene position: 1386681-1386268 (Counterclockwise)

Preceding gene: 110678776

Following gene: 110678774

Centisome position: 33.55

GC content: 60.87

Gene sequence:

>414_bases
ATGTCGCCGCTGCATGTCACACCTGTGAAATCAACCGCCGAAGGGGTCGCACCTCCGGCGGTTTCTTCGCGTTTGACGCA
GATCACCAAGCGCGCCGACTTTTTGCGCGCCGCCCGCGCGCCGCGCGCTGTTACCCCCGGTTTCATCCTTCAGATGCGTC
GGCGACCGGCAAGTGACGCTGCGGTCATCCGCGTCGGGTTCACCTGTTCCAAGAAGGTCGGCAATGCAGTCGCGCGCAAC
CGCGCCAAACGCCGCCTGCGCGAAATAGCCCGGCTGATCCTGCCCGAAAAGGGTCTTCCAGGTGTTGATTACGTCTTCAT
TGGACGCGCAAATACGACAGCACAACGGCCGTTTCCTTTGCTGATGCAGGATCTTGCTACCGCATTGGATAAACTCCACA
CAGCGGCGCGATGA

Upstream 100 bases:

>100_bases
GCGTATGGCCACAAAGGCGGGCCGCAAGATCATCAACGCGCGCCGCGCCCATGGCCGCAAGTCGCTGAGCGCCTGATCTG
ATCCCAACGGGGTCATTCAG

Downstream 100 bases:

>100_bases
GCCCGCTGGCCCATCTTCTGGCGCTGCCCGTGCGCGCCTATCGGCTGATTTTCAGCCCATGGGTCGGCTACAATTGCCGA
TACCAGCCGACCTGCAGCGC

Product: ribonuclease P protein component, putative

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MSPLHVTPVKSTAEGVAPPAVSSRLTQITKRADFLRAARAPRAVTPGFILQMRRRPASDAAVIRVGFTCSKKVGNAVARN
RAKRRLREIARLILPEKGLPGVDYVFIGRANTTAQRPFPLLMQDLATALDKLHTAAR

Sequences:

>Translated_137_residues
MSPLHVTPVKSTAEGVAPPAVSSRLTQITKRADFLRAARAPRAVTPGFILQMRRRPASDAAVIRVGFTCSKKVGNAVARN
RAKRRLREIARLILPEKGLPGVDYVFIGRANTTAQRPFPLLMQDLATALDKLHTAAR
>Mature_136_residues
SPLHVTPVKSTAEGVAPPAVSSRLTQITKRADFLRAARAPRAVTPGFILQMRRRPASDAAVIRVGFTCSKKVGNAVARNR
AKRRLREIARLILPEKGLPGVDYVFIGRANTTAQRPFPLLMQDLATALDKLHTAAR

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 14949; Mature: 14818

Theoretical pI: Translated: 12.32; Mature: 12.32

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLHVTPVKSTAEGVAPPAVSSRLTQITKRADFLRAARAPRAVTPGFILQMRRRPASDA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC
AVIRVGFTCSKKVGNAVARNRAKRRLREIARLILPEKGLPGVDYVFIGRANTTAQRPFPL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHH
LMQDLATALDKLHTAAR
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SPLHVTPVKSTAEGVAPPAVSSRLTQITKRADFLRAARAPRAVTPGFILQMRRRPASDA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC
AVIRVGFTCSKKVGNAVARNRAKRRLREIARLILPEKGLPGVDYVFIGRANTTAQRPFPL
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHH
LMQDLATALDKLHTAAR
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA