Click here to switch to the map view.

The map label for this gene is yidD [C]

Identifier: 110678774

GI number: 110678774

Start: 1386035

End: 1386271

Strand: Reverse

Name: yidD [C]

Synonym: RD1_1458

Alternate gene names: 110678774

Gene position: 1386271-1386035 (Counterclockwise)

Preceding gene: 110678775

Following gene: 110678773

Centisome position: 33.54

GC content: 64.14

Gene sequence:

>237_bases
ATGAGCCCGCTGGCCCATCTTCTGGCGCTGCCCGTGCGCGCCTATCGGCTGATTTTCAGCCCATGGGTCGGCTACAATTG
CCGATACCAGCCGACCTGCAGCGCCTACGCCCTTGAAGCGTTGCAAAAACACGGCGGCTTGATCGGCGCGTGGCTGACCC
TGCGGCGGATTTTGCGTTGTCACCCGTGGGGGAAATGCGGCTATGACCCTGTGCCCGAGCGCACGCGCAAGCCCTGA

Upstream 100 bases:

>100_bases
ACGTCTTCATTGGACGCGCAAATACGACAGCACAACGGCCGTTTCCTTTGCTGATGCAGGATCTTGCTACCGCATTGGAT
AAACTCCACACAGCGGCGCG

Downstream 100 bases:

>100_bases
CCCTGCAATCCGTGGCGCGCACGCTCGCCTTTATGCAGAATGCAGGGGTATCGAGCCTCTTTTGGTTCATCCCCACACGC
GATATAGAACGTCAAGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MSPLAHLLALPVRAYRLIFSPWVGYNCRYQPTCSAYALEALQKHGGLIGAWLTLRRILRCHPWGKCGYDPVPERTRKP

Sequences:

>Translated_78_residues
MSPLAHLLALPVRAYRLIFSPWVGYNCRYQPTCSAYALEALQKHGGLIGAWLTLRRILRCHPWGKCGYDPVPERTRKP
>Mature_77_residues
SPLAHLLALPVRAYRLIFSPWVGYNCRYQPTCSAYALEALQKHGGLIGAWLTLRRILRCHPWGKCGYDPVPERTRKP

Specific function: Unknown

COG id: COG0759

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0161 family

Homologues:

Organism=Escherichia coli, GI87082322, Length=72, Percent_Identity=45.8333333333333, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1458_ROSDO (Q16A98)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681781.1
- STRING:   Q16A98
- GeneID:   4197233
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1458
- NMPDR:   fig|375451.6.peg.1367
- eggNOG:   COG0759
- HOGENOM:   HBG634291
- OMA:   LKRISKC
- ProtClustDB:   CLSK2516639
- BioCyc:   RDEN375451:RD1_1458-MONOMER
- HAMAP:   MF_00386
- InterPro:   IPR002696
- ProDom:   PD004225
- TIGRFAMs:   TIGR00278

Pfam domain/function: PF01809 DUF37

EC number: NA

Molecular weight: Translated: 8936; Mature: 8804

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLAHLLALPVRAYRLIFSPWVGYNCRYQPTCSAYALEALQKHGGLIGAWLTLRRILRC
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
HPWGKCGYDPVPERTRKP
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPLAHLLALPVRAYRLIFSPWVGYNCRYQPTCSAYALEALQKHGGLIGAWLTLRRILRC
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
HPWGKCGYDPVPERTRKP
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA