| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678673
Identifier: 110678673
GI number: 110678673
Start: 1303075
End: 1303668
Strand: Reverse
Name: 110678673
Synonym: RD1_1352
Alternate gene names: NA
Gene position: 1303668-1303075 (Counterclockwise)
Preceding gene: 110678674
Following gene: 110678672
Centisome position: 31.54
GC content: 63.97
Gene sequence:
>594_bases GTGAGTGATGCTGAAACCCTCTCCGTCTATGCGGCCAAAGCGGATGACTATGCCAATCTGACCGACGAGGCCGCCGCTCG GGACCCGAGCCTGGTCGCCTTTATCGCGGCCATGCCGAAGCGCGGGCGCGTCCTTGATCTGGGCTGTGGTCCGGGCGGGT CAGCCGCCGCAATGGCACGAGCCGGGCTTGTTGTGGACGCCTTTGACCCGGTCCCTGAAATGGTGGCACTGGCCGGGCGC CACGCGGGTGTGAGCGCCCGCAAAGCCGGTTTCGAGGATGTCACACAGGTCGATCACTACGATGGGATCTGGGCCAATTT CTCGCTGCTCCATGCCCCGCGCGATGACATGCCAAAGCATTTGGCCCGGATCGCGACCGCCCTGAAACCCGGCGGGCGGT TTCACATCGGGGTCAAAACCGGCACGGGCAGCAAACGCGATACCTTGGGCAGGCGTTACACATATTATAGCGAAAGCGAG CTGGTCGACCTGCTGGCGGCGGCGGGGCTCACGGTATTTGATCGCCGCGAAGGCTGCGACACGGGTCTGGACGGCGTTGA TGCCCATTGGATTGTACTGGCCGCCCATGCCTGA
Upstream 100 bases:
>100_bases TCGCCTTTTCGATCTGGGGCCTCGCGCCAAGATGGTGGATGTCCCTGCGCATTTTGTTGACCAGCATCGTAGTCGCCTGT CTGGCCGTCGGGGTGTTCCT
Downstream 100 bases:
>100_bases GTTGTTCGCCTATACGGATGGTGCCTGTTCGGGCAACCCGGGCCCCGGCGGCTGGGGCGTTTTGCTGCAGGCCAAAGAGG GCGACAGGCTGGTCAAGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Methyltransferase; SAM-Dependent Methyltransferase Protein; Tellurite Resistance Protein-Related Protein; SAM-Dependent Methyltransferase; Type III Restriction Protein Res Subunit; Methyltransferase Family Protein; Tellurite Resistance Related Protein; Generic Methyltransferase; Methyltransferase Domain Family; 3-Demethylubiquinone-9 3-Methyltransferase
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MSDAETLSVYAAKADDYANLTDEAAARDPSLVAFIAAMPKRGRVLDLGCGPGGSAAAMARAGLVVDAFDPVPEMVALAGR HAGVSARKAGFEDVTQVDHYDGIWANFSLLHAPRDDMPKHLARIATALKPGGRFHIGVKTGTGSKRDTLGRRYTYYSESE LVDLLAAAGLTVFDRREGCDTGLDGVDAHWIVLAAHA
Sequences:
>Translated_197_residues MSDAETLSVYAAKADDYANLTDEAAARDPSLVAFIAAMPKRGRVLDLGCGPGGSAAAMARAGLVVDAFDPVPEMVALAGR HAGVSARKAGFEDVTQVDHYDGIWANFSLLHAPRDDMPKHLARIATALKPGGRFHIGVKTGTGSKRDTLGRRYTYYSESE LVDLLAAAGLTVFDRREGCDTGLDGVDAHWIVLAAHA >Mature_196_residues SDAETLSVYAAKADDYANLTDEAAARDPSLVAFIAAMPKRGRVLDLGCGPGGSAAAMARAGLVVDAFDPVPEMVALAGRH AGVSARKAGFEDVTQVDHYDGIWANFSLLHAPRDDMPKHLARIATALKPGGRFHIGVKTGTGSKRDTLGRRYTYYSESEL VDLLAAAGLTVFDRREGCDTGLDGVDAHWIVLAAHA
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20825; Mature: 20693
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAETLSVYAAKADDYANLTDEAAARDPSLVAFIAAMPKRGRVLDLGCGPGGSAAAMAR CCCCCEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHH AGLVVDAFDPVPEMVALAGRHAGVSARKAGFEDVTQVDHYDGIWANFSLLHAPRDDMPKH CCEEEECCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHCCCCCEECEEEEECCCCCHHHH LARIATALKPGGRFHIGVKTGTGSKRDTLGRRYTYYSESELVDLLAAAGLTVFDRREGCD HHHHHHHHCCCCEEEEEEECCCCCCHHCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCC TGLDGVDAHWIVLAAHA CCCCCCCCEEEEEEECC >Mature Secondary Structure SDAETLSVYAAKADDYANLTDEAAARDPSLVAFIAAMPKRGRVLDLGCGPGGSAAAMAR CCCCEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHH AGLVVDAFDPVPEMVALAGRHAGVSARKAGFEDVTQVDHYDGIWANFSLLHAPRDDMPKH CCEEEECCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHCCCCCEECEEEEECCCCCHHHH LARIATALKPGGRFHIGVKTGTGSKRDTLGRRYTYYSESELVDLLAAAGLTVFDRREGCD HHHHHHHHCCCCEEEEEEECCCCCCHHCCCCEEEEECHHHHHHHHHHCCCEEEECCCCCC TGLDGVDAHWIVLAAHA CCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA