Click here to switch to the map view.

The map label for this gene is 110678664

Identifier: 110678664

GI number: 110678664

Start: 1293980

End: 1294672

Strand: Reverse

Name: 110678664

Synonym: RD1_1343

Alternate gene names: NA

Gene position: 1294672-1293980 (Counterclockwise)

Preceding gene: 110678665

Following gene: 110678663

Centisome position: 31.32

GC content: 60.61

Gene sequence:

>693_bases
ATGGACCGTTCAGACCCCACCTTGCACCGCGACAACCCCGACAGTGAACCGCTGATCGGCAATATCAAGGTGACCCGCGA
TGATTGGCTAAACATCGCCATGGCCGCCCTGATCCGCGACGGGGTCGAAGGCGTGAAAATTCAGGCCATGGGCGCGGCCC
TTGGCGTGTCACGATCCAGCTTCTACTGGTATTTCAAATCCCGACAGGACCTGCTTGATGCGCTGCTGGAGCATTGGCGC
CACACCAATACGGCGGCCTTGGTCCGTATGGCCGAGCGCCCCGCCGATACGATCACCGAAGCGGTGGGAAATGTGTTTCG
CTGTGTGATTAATCCCGCGCTTTTTGACACGCGGCTGGATTTTGCCGTGCGCGATTGGGCGCGTCGCTCGCAAGAGGTGC
GCGCTGTGCTGGACGCCTCGGAAACGCAGCGCCTGAGCGCCCTGCAGGCGATGTTCGAGAGGTTCGACTACCCACCCCTC
GAAGCGACGGCCCGGGCGCGCATCCTCTACTACATGCAGATCGGGTATGATGACGCAAAGTTGAACGAGCCGATGGAGAC
CCGCAACAGATTGATGCCCGCCTATCTGGTTGGCTTTACCGGAAAGACACCATCGGCACGCGAAGTTGCGGAATTGCGGG
CCTATGCCAATGCGCTGGACCCGGTAAAAGGTGCCAACGACGGTTCGGCCTGA

Upstream 100 bases:

>100_bases
TAAACGGCCCGAGGTGGACGGCAAACGTCTGGAGAACCTGCAGGATTTCATCGCAAAACGCACGGCCGAGGGCGGTGCCC
CGCCCGAAAGCTAGACACCG

Downstream 100 bases:

>100_bases
CACAGTTCTTCGCGCGCGCACGCGCAGGCCCCGCCCTTGGAGGCGTGCAATTTCGAACTAACTGGTTTACCTGTGCAATG
ATTATTTTACAGGGCGCTCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein; Regulatory Protein TetR; Transcriptional Regulator Protein TetR Family; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; TetR Family Regulatory Protein

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MDRSDPTLHRDNPDSEPLIGNIKVTRDDWLNIAMAALIRDGVEGVKIQAMGAALGVSRSSFYWYFKSRQDLLDALLEHWR
HTNTAALVRMAERPADTITEAVGNVFRCVINPALFDTRLDFAVRDWARRSQEVRAVLDASETQRLSALQAMFERFDYPPL
EATARARILYYMQIGYDDAKLNEPMETRNRLMPAYLVGFTGKTPSAREVAELRAYANALDPVKGANDGSA

Sequences:

>Translated_230_residues
MDRSDPTLHRDNPDSEPLIGNIKVTRDDWLNIAMAALIRDGVEGVKIQAMGAALGVSRSSFYWYFKSRQDLLDALLEHWR
HTNTAALVRMAERPADTITEAVGNVFRCVINPALFDTRLDFAVRDWARRSQEVRAVLDASETQRLSALQAMFERFDYPPL
EATARARILYYMQIGYDDAKLNEPMETRNRLMPAYLVGFTGKTPSAREVAELRAYANALDPVKGANDGSA
>Mature_230_residues
MDRSDPTLHRDNPDSEPLIGNIKVTRDDWLNIAMAALIRDGVEGVKIQAMGAALGVSRSSFYWYFKSRQDLLDALLEHWR
HTNTAALVRMAERPADTITEAVGNVFRCVINPALFDTRLDFAVRDWARRSQEVRAVLDASETQRLSALQAMFERFDYPPL
EATARARILYYMQIGYDDAKLNEPMETRNRLMPAYLVGFTGKTPSAREVAELRAYANALDPVKGANDGSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25913; Mature: 25913

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSDPTLHRDNPDSEPLIGNIKVTRDDWLNIAMAALIRDGVEGVKIQAMGAALGVSRSS
CCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
FYWYFKSRQDLLDALLEHWRHTNTAALVRMAERPADTITEAVGNVFRCVINPALFDTRLD
EEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FAVRDWARRSQEVRAVLDASETQRLSALQAMFERFDYPPLEATARARILYYMQIGYDDAK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCHHH
LNEPMETRNRLMPAYLVGFTGKTPSAREVAELRAYANALDPVKGANDGSA
CCCCHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDRSDPTLHRDNPDSEPLIGNIKVTRDDWLNIAMAALIRDGVEGVKIQAMGAALGVSRSS
CCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
FYWYFKSRQDLLDALLEHWRHTNTAALVRMAERPADTITEAVGNVFRCVINPALFDTRLD
EEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FAVRDWARRSQEVRAVLDASETQRLSALQAMFERFDYPPLEATARARILYYMQIGYDDAK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEEEEECCCHHH
LNEPMETRNRLMPAYLVGFTGKTPSAREVAELRAYANALDPVKGANDGSA
CCCCHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA