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The map label for this gene is glcD [H]

Identifier: 110678616

GI number: 110678616

Start: 1254791

End: 1256206

Strand: Reverse

Name: glcD [H]

Synonym: RD1_1292

Alternate gene names: 110678616

Gene position: 1256206-1254791 (Counterclockwise)

Preceding gene: 110678617

Following gene: 110678615

Centisome position: 30.39

GC content: 59.89

Gene sequence:

>1416_bases
ATGACCTCAATCTCTGGCAAAACTGACATAGACTGGCGTGCCTTTGCCGCAGCCCTCGCCCCCGTGCAGGTGATCGACGA
GCCGGTACTGGTCAAAAAGCGCAGCCGCGATTTCTTTTGGTACAGCCCGATCCTGAACGCGGATCTGAAACGCTGCTTCG
GCGATCTGGTGGCTCGCCCCAAAAACGCGGATGAGATGCGGCATGTGCTGGCCGTGGCCTATGCGTTTGACGCGCCTGTC
GTCCTGCGCGGCGGGGGCACAGGCAATTACGGTCAGGCCGTGCCGATGGAGGGCGGTCTGATCATCGAGACAACCGCCAT
GAACAAGGTTCTGGAAATCGGCGAAGGCTATGTGCGCGCCCAAGCCGGTGCCTTGATGGCAGACATAAATGCAGCCCTTA
TCGCGCGGGGCTACGAAATGGCGATGTTCCCGTCCACGCAGGACATCGCAACGATCGGCGGGTTTGTCGCAGGCGGCTCT
GCCGGGATCGGGTCCATCGCCAATGGTGCGCTGCGCGATCCGGGCAACCTCATGTCGATCAAGGTGCAATCAGTCGAGGA
AATCCCAACCGAACATGTCTTTGAGGGCGCGGAAACGCTGCACATCCATCATGCCTGGGGGTTGAATGGTGTCATCACCG
AAATCACCCTGCGCACGGTGCCAACGCAGGATTGGGTTGGATGCCTTGCGACCTTTGAGACCTATGAAAATGCCTATGCG
GCCGGGCTGGCTCTGGCGCAGGCAGAGGACGTCCGGTGCAAACTGCTGACCACGGTTGATGCCCGGATCTGCGCCTATTT
CCCGCGCCTCAAGGGGTACATCCGGCCCGACAAACACCTGTTGGTGTCCTTGGTGCCGAAAGACGACATCGCAGGATTTG
AAACATGCATCCGCGCTGCGGGCGGGCACTGCGATCTGACCCTGAGCGAGGCGGACAGGATCGCTGCAAAGCTGCCGCAT
GTCTTTGACTTTTCCTATAACCACACGACGCTGCAGGTGCTCAAGGCGGATCGCAGCGCCACCTACCAGCAAATCGGATG
CCCGATACCGCCCGATCCCACAGCCATTGCAAGGCTGCGGCCCAAGCTGGGAGATGACGTGTGGATGCATCACGAGTTTG
CACGCGTCGGCGGGCAGATCGTGACCTTTGATCTGCCGATCATCTGGTTTTCCACGGCACAGCGGCTGGCGCAGATCAAC
GCAACCTATGAGGCGAACGGGTTTGCGGTTTATGATGCGCATACGTGGCAGGTCGAGGGCGGTGGCCTCAAAAACGCGGA
TTACCGGCACCTTGCGTGGAAAAAGCGGATGGACCCAAAGGGACTGCTGAACAGCGCCAAGTCAGCGGTTTGGAAGACGG
TCAAACATCTACCCGCTGACGAGATCGAAGCCCTCGCTGCAGAGGCGCAAAGCTGA

Upstream 100 bases:

>100_bases
TCTCGCAACTGCGCCTGTGCACCGCCGCAAGCACCGCCGAACTGCTGGCCACGCGCAACCCATTGCTGCCGCTGCATCAT
TTTGAAAAGGCATCGACCCC

Downstream 100 bases:

>100_bases
AAAAGTCCCTTCAAAGGGAGCCTGTGCGCGCGGCAGATTCTACCGGGCGCGCCCCGGGAGTGTGCGAGAACAGATTCGCA
ACAAAGCGCTTTGGCATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MTSISGKTDIDWRAFAAALAPVQVIDEPVLVKKRSRDFFWYSPILNADLKRCFGDLVARPKNADEMRHVLAVAYAFDAPV
VLRGGGTGNYGQAVPMEGGLIIETTAMNKVLEIGEGYVRAQAGALMADINAALIARGYEMAMFPSTQDIATIGGFVAGGS
AGIGSIANGALRDPGNLMSIKVQSVEEIPTEHVFEGAETLHIHHAWGLNGVITEITLRTVPTQDWVGCLATFETYENAYA
AGLALAQAEDVRCKLLTTVDARICAYFPRLKGYIRPDKHLLVSLVPKDDIAGFETCIRAAGGHCDLTLSEADRIAAKLPH
VFDFSYNHTTLQVLKADRSATYQQIGCPIPPDPTAIARLRPKLGDDVWMHHEFARVGGQIVTFDLPIIWFSTAQRLAQIN
ATYEANGFAVYDAHTWQVEGGGLKNADYRHLAWKKRMDPKGLLNSAKSAVWKTVKHLPADEIEALAAEAQS

Sequences:

>Translated_471_residues
MTSISGKTDIDWRAFAAALAPVQVIDEPVLVKKRSRDFFWYSPILNADLKRCFGDLVARPKNADEMRHVLAVAYAFDAPV
VLRGGGTGNYGQAVPMEGGLIIETTAMNKVLEIGEGYVRAQAGALMADINAALIARGYEMAMFPSTQDIATIGGFVAGGS
AGIGSIANGALRDPGNLMSIKVQSVEEIPTEHVFEGAETLHIHHAWGLNGVITEITLRTVPTQDWVGCLATFETYENAYA
AGLALAQAEDVRCKLLTTVDARICAYFPRLKGYIRPDKHLLVSLVPKDDIAGFETCIRAAGGHCDLTLSEADRIAAKLPH
VFDFSYNHTTLQVLKADRSATYQQIGCPIPPDPTAIARLRPKLGDDVWMHHEFARVGGQIVTFDLPIIWFSTAQRLAQIN
ATYEANGFAVYDAHTWQVEGGGLKNADYRHLAWKKRMDPKGLLNSAKSAVWKTVKHLPADEIEALAAEAQS
>Mature_470_residues
TSISGKTDIDWRAFAAALAPVQVIDEPVLVKKRSRDFFWYSPILNADLKRCFGDLVARPKNADEMRHVLAVAYAFDAPVV
LRGGGTGNYGQAVPMEGGLIIETTAMNKVLEIGEGYVRAQAGALMADINAALIARGYEMAMFPSTQDIATIGGFVAGGSA
GIGSIANGALRDPGNLMSIKVQSVEEIPTEHVFEGAETLHIHHAWGLNGVITEITLRTVPTQDWVGCLATFETYENAYAA
GLALAQAEDVRCKLLTTVDARICAYFPRLKGYIRPDKHLLVSLVPKDDIAGFETCIRAAGGHCDLTLSEADRIAAKLPHV
FDFSYNHTTLQVLKADRSATYQQIGCPIPPDPTAIARLRPKLGDDVWMHHEFARVGGQIVTFDLPIIWFSTAQRLAQINA
TYEANGFAVYDAHTWQVEGGGLKNADYRHLAWKKRMDPKGLLNSAKSAVWKTVKHLPADEIEALAAEAQS

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789351, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 51259; Mature: 51128

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSISGKTDIDWRAFAAALAPVQVIDEPVLVKKRSRDFFWYSPILNADLKRCFGDLVARP
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCC
KNADEMRHVLAVAYAFDAPVVLRGGGTGNYGQAVPMEGGLIIETTAMNKVLEIGEGYVRA
CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCEEH
QAGALMADINAALIARGYEMAMFPSTQDIATIGGFVAGGSAGIGSIANGALRDPGNLMSI
HCCCHHHHCCHHHHHCCCEEEECCCCCHHHHHCCEECCCCCCCCHHCCCCCCCCCCEEEE
KVQSVEEIPTEHVFEGAETLHIHHAWGLNGVITEITLRTVPTQDWVGCLATFETYENAYA
EECCHHHCCHHHHHCCCEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
AGLALAQAEDVRCKLLTTVDARICAYFPRLKGYIRPDKHLLVSLVPKDDIAGFETCIRAA
HHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHC
GGHCDLTLSEADRIAAKLPHVFDFSYNHTTLQVLKADRSATYQQIGCPIPPDPTAIARLR
CCCEEEEHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCHHHHCCCCCCCCCHHHHHHC
PKLGDDVWMHHEFARVGGQIVTFDLPIIWFSTAQRLAQINATYEANGFAVYDAHTWQVEG
CCCCCCHHHHHHHHHHCCEEEEEECCEEEHHHHHHHHHHCCEEECCCEEEEEEEEEEECC
GGLKNADYRHLAWKKRMDPKGLLNSAKSAVWKTVKHLPADEIEALAAEAQS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TSISGKTDIDWRAFAAALAPVQVIDEPVLVKKRSRDFFWYSPILNADLKRCFGDLVARP
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCC
KNADEMRHVLAVAYAFDAPVVLRGGGTGNYGQAVPMEGGLIIETTAMNKVLEIGEGYVRA
CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCEEH
QAGALMADINAALIARGYEMAMFPSTQDIATIGGFVAGGSAGIGSIANGALRDPGNLMSI
HCCCHHHHCCHHHHHCCCEEEECCCCCHHHHHCCEECCCCCCCCHHCCCCCCCCCCEEEE
KVQSVEEIPTEHVFEGAETLHIHHAWGLNGVITEITLRTVPTQDWVGCLATFETYENAYA
EECCHHHCCHHHHHCCCEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
AGLALAQAEDVRCKLLTTVDARICAYFPRLKGYIRPDKHLLVSLVPKDDIAGFETCIRAA
HHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHC
GGHCDLTLSEADRIAAKLPHVFDFSYNHTTLQVLKADRSATYQQIGCPIPPDPTAIARLR
CCCEEEEHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCHHHHCCCCCCCCCHHHHHHC
PKLGDDVWMHHEFARVGGQIVTFDLPIIWFSTAQRLAQINATYEANGFAVYDAHTWQVEG
CCCCCCHHHHHHHHHHCCEEEEEECCEEEHHHHHHHHHHCCEEECCCEEEEEEEEEEECC
GGLKNADYRHLAWKKRMDPKGLLNSAKSAVWKTVKHLPADEIEALAAEAQS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]