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The map label for this gene is 110678515

Identifier: 110678515

GI number: 110678515

Start: 1148486

End: 1149205

Strand: Direct

Name: 110678515

Synonym: RD1_1186

Alternate gene names: NA

Gene position: 1148486-1149205 (Clockwise)

Preceding gene: 110678510

Following gene: 110678519

Centisome position: 27.79

GC content: 59.17

Gene sequence:

>720_bases
ATGAGCCAGAGCATCGTCAAGGAACCCCGCACTATGAACGAGACGCAGAACACACCGCCCGTAAACCCATTGCCCCCTGT
TGTCATGGTGTTGTGTCTGGCGCTGGTGGTGCCGGAGATCGTCTTCCTGCTCGGAACGCAGGGTTGGATCGGCGGACCGG
AGGCGATTGGATGGCGCCTGAGTGCCGTGCAGCAATATGCTTTCTCGGGGGATATTTTCGACTGGATGATGACAAATGGC
CGCTGGGTGCCAGAACACTTGGCCCGCTTTGTCACCTATGCCTTTGTGCACGGCTCGTTTACCGCGACGCTTTTCTCGGC
GGTGCTGATGCTCGCTTTGGGCAAGCTCGTGGGCGAAACCATGGGGCAGGTGGCGGTGCTGGTGCTCTACTTTGGCGGCA
GCATCTTTGGCGCGCTGATCTATGCGCTGTTTCTGAATGATCCCGCGTGGCTGATCGGCGGCTTTCCGGCGGTCTACGGG
CTGATCGGTGGATATACATTTTTGATGTGGCAGCGGCTTGCGGATACAGGCGGGCCGCAATTTCGCGCCTTTAGCCTGAT
TGCGATTTTGCTGGGTCTGCAGCTTGTTTTCGGCGCCTTGTTCGGCCCCACAACCGAATGGGTCGCGGATCTGGCGGGTT
TTGTCTTCGGGTTCTGTGCGTCGGTTTTGCTGGTGCCGGGGGGGCTGGCGCGGGTTATTTATCACTTTCGGCGCGACTAG

Upstream 100 bases:

>100_bases
CCCGAAGGCTGGATGCCGGAAAAAACACGGGGGGCGAAGGTGGGGCTGGTCATGAAAGGCGTCCGTTCTCGCTGGCAATG
AAGTCTGCGCTGGCTTACCC

Downstream 100 bases:

>100_bases
GGCTGCGGCGCATCGCGGCCTTGAACTCGGCCAGCCGGAACGCACCCAGCATCTGACCCGCCCCGAAATAGGTCACAACG
CCAATCCCGATCAGCGCACA

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Peptidase

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSQSIVKEPRTMNETQNTPPVNPLPPVVMVLCLALVVPEIVFLLGTQGWIGGPEAIGWRLSAVQQYAFSGDIFDWMMTNG
RWVPEHLARFVTYAFVHGSFTATLFSAVLMLALGKLVGETMGQVAVLVLYFGGSIFGALIYALFLNDPAWLIGGFPAVYG
LIGGYTFLMWQRLADTGGPQFRAFSLIAILLGLQLVFGALFGPTTEWVADLAGFVFGFCASVLLVPGGLARVIYHFRRD

Sequences:

>Translated_239_residues
MSQSIVKEPRTMNETQNTPPVNPLPPVVMVLCLALVVPEIVFLLGTQGWIGGPEAIGWRLSAVQQYAFSGDIFDWMMTNG
RWVPEHLARFVTYAFVHGSFTATLFSAVLMLALGKLVGETMGQVAVLVLYFGGSIFGALIYALFLNDPAWLIGGFPAVYG
LIGGYTFLMWQRLADTGGPQFRAFSLIAILLGLQLVFGALFGPTTEWVADLAGFVFGFCASVLLVPGGLARVIYHFRRD
>Mature_238_residues
SQSIVKEPRTMNETQNTPPVNPLPPVVMVLCLALVVPEIVFLLGTQGWIGGPEAIGWRLSAVQQYAFSGDIFDWMMTNGR
WVPEHLARFVTYAFVHGSFTATLFSAVLMLALGKLVGETMGQVAVLVLYFGGSIFGALIYALFLNDPAWLIGGFPAVYGL
IGGYTFLMWQRLADTGGPQFRAFSLIAILLGLQLVFGALFGPTTEWVADLAGFVFGFCASVLLVPGGLARVIYHFRRD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26032; Mature: 25901

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSIVKEPRTMNETQNTPPVNPLPPVVMVLCLALVVPEIVFLLGTQGWIGGPEAIGWRL
CCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SAVQQYAFSGDIFDWMMTNGRWVPEHLARFVTYAFVHGSFTATLFSAVLMLALGKLVGET
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQVAVLVLYFGGSIFGALIYALFLNDPAWLIGGFPAVYGLIGGYTFLMWQRLADTGGPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FRAFSLIAILLGLQLVFGALFGPTTEWVADLAGFVFGFCASVLLVPGGLARVIYHFRRD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SQSIVKEPRTMNETQNTPPVNPLPPVVMVLCLALVVPEIVFLLGTQGWIGGPEAIGWRL
CCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
SAVQQYAFSGDIFDWMMTNGRWVPEHLARFVTYAFVHGSFTATLFSAVLMLALGKLVGET
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGQVAVLVLYFGGSIFGALIYALFLNDPAWLIGGFPAVYGLIGGYTFLMWQRLADTGGPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FRAFSLIAILLGLQLVFGALFGPTTEWVADLAGFVFGFCASVLLVPGGLARVIYHFRRD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA