Click here to switch to the map view.

The map label for this gene is yjcG [C]

Identifier: 110678449

GI number: 110678449

Start: 1066473

End: 1068275

Strand: Reverse

Name: yjcG [C]

Synonym: RD1_1114

Alternate gene names: 110678449

Gene position: 1068275-1066473 (Counterclockwise)

Preceding gene: 110678450

Following gene: 110678448

Centisome position: 25.85

GC content: 59.29

Gene sequence:

>1803_bases
ATGGACCAGTTTACACTGAACCTGCTGTTTGTGGGCGCGTCTTTCGCGCTTTACATCGGCATTGCGGTCTGGGCCCGTGC
AGGCTCGACCTCCGAATTCTATGCCGCGGGCCGGGGTGTTCATCCTGTCACCAACGGTATGGCCACGGCGGCGGACTGGA
TGTCTGCGGCGTCCTTCATTTCCATGGCCGGTCTGATTGCCTTCACCGGGTATGACAACTCCTCCTTCCTGATGGGCTGG
ACAGGCGGCTATGTGCTGCTGGCACTGCTCTTGGCGCCTTACCTGCGAAAGTTCGGCAAGTTCACCGTGTCTGAATTCAT
CGGTGATCGTTTCTACTCCCCCACGGCGCGTCTGGTGGCCGTGATCTGCCTGCTGGTGGCCTCGATCACCTATGTGATCG
GACAGATGCAGGGTGTGGGCATCGCCTTTGGCCGCTTCCTTGAGATCGACGCCTTCTGGGGTCTGCTTCTGGGGTCTTGC
GTCGTGTTCGCTTATGCCGTTTTCGGCGGCATGAAGGGTGTTACATACACGCAGGTCGCGCAATACTGCGTGCTGATCCT
CGCCTACACGATCCCGGCTGTGTTCATCTCTCTGCAACTGACGGGGACACCCATCCCGGCGCTCGGTCTGTTTTCAGAAA
CGCTCAACGCAGATGGCACAAGCAGCGGTGTTTACCTGCTGACAAAACTGGACCAGATCGTAACCGACCTTGGTTTTGCC
AGCTACACCGAGGCGCATAAAGACAGCCTGAACATGGTTCTCTTTACCCTGTCACTGATGATCGGGACCGCCGGTTTGCC
GCATGTGATCATGCGCTTCTTTACAGTCCCACGCGTATCTGACGCACGTTGGTCGGCGGGCTGGACGCTGGTCTTCATCG
CGCTGCTCTATCTCACGGCCCCTGCGGTTGGTGCGATGGCACGCCTGAACATCTCCGAGATGATGTGGCCAAACGGTGTG
AACGGCGAAGCAGTATCGGTTGAGACAATCGAGACATCGCCCGAGTACAACTGGATGGCGACATGGCAGAAAACCGGTCT
TCTCGATTGGGAAGACAAGAACGGCGACGGCAAGATCCAGTACTACAACGACAAGAACGACGCGATGGCTGAAAAGGCGG
CGGCAAACGGCTGGGAAGGCAATGAGCTGACCAACTTCAACCGCGACATCCTCGTGCTGGCCAACCCTGAGATTGCGAAC
CTGCCGGGCTGGGTGATCGGTCTTGTGGCTGCGGGCGGTCTTGCCGCGGCGCTGTCCACGGCGGCCGGTCTGTTGCTGGC
GATCTCCTCAGCGGTCAGTCATGACCTGCTCAAGGGGCAGCTGACGCCGAACATGTCGGAAAAATCCGAACTGCTTGCGG
CGCGGATCTCCATGGCGGCAGCGATCGTGGTCGCGGTCATCCTCGGCCTCAATCCTCCGGGCTTTGCGGCGCAGACGGTG
GCTCTGGCCTTTGGTCTGGCGGCGGCGTCGATCTTCCCGGCCCTGATGATGGGGATCTTCTCCAAGCGGGTGAACAACGT
GGGCGCGGTTGCCGGTATGCTTGCCGGTCTGGTCTTCACGCTGGTCTATATCTTCCTGCACAAAGGCTGGTTCTTCATCC
CTGACACCAACTCCTTTGCGGATACGGCAGAGGGCAGCTTGCTGGGCATCCAGTCCACCGCCATCGGTGCGGTTGGCGCG
GTGATCAACTTTGCGGTTGCCTTCGGTGTCTCTTCGATCACCAAGGAAACACCGCAGGAGATCAAGGACCTTGTCGAAAG
TGTTCGTGTGCCAGCCGGTGCCGGCGGTGCAGTAGATCACTAA

Upstream 100 bases:

>100_bases
TGCCCAGCAAGGTTCCATTCTCGTCTTTCTCGCACTGATCTTTTTCTACGCCTGGCGGATGAACAAGATCGACAAACAAT
ACGGCGTGGAGGAATAGGCA

Downstream 100 bases:

>100_bases
GCCTTGCGGTTGGCCGGGAAATCCCCGGCCAGTCCACAAAACACACCTGCCCCGCATGACGTGGGGCAGGTGCCTTTCTT
CAAGGATGTTTCGATGAACG

Product: sodium symporter, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MDQFTLNLLFVGASFALYIGIAVWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFISMAGLIAFTGYDNSSFLMGW
TGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVAVICLLVASITYVIGQMQGVGIAFGRFLEIDAFWGLLLGSC
VVFAYAVFGGMKGVTYTQVAQYCVLILAYTIPAVFISLQLTGTPIPALGLFSETLNADGTSSGVYLLTKLDQIVTDLGFA
SYTEAHKDSLNMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSAGWTLVFIALLYLTAPAVGAMARLNISEMMWPNGV
NGEAVSVETIETSPEYNWMATWQKTGLLDWEDKNGDGKIQYYNDKNDAMAEKAAANGWEGNELTNFNRDILVLANPEIAN
LPGWVIGLVAAGGLAAALSTAAGLLLAISSAVSHDLLKGQLTPNMSEKSELLAARISMAAAIVVAVILGLNPPGFAAQTV
ALAFGLAAASIFPALMMGIFSKRVNNVGAVAGMLAGLVFTLVYIFLHKGWFFIPDTNSFADTAEGSLLGIQSTAIGAVGA
VINFAVAFGVSSITKETPQEIKDLVESVRVPAGAGGAVDH

Sequences:

>Translated_600_residues
MDQFTLNLLFVGASFALYIGIAVWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFISMAGLIAFTGYDNSSFLMGW
TGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVAVICLLVASITYVIGQMQGVGIAFGRFLEIDAFWGLLLGSC
VVFAYAVFGGMKGVTYTQVAQYCVLILAYTIPAVFISLQLTGTPIPALGLFSETLNADGTSSGVYLLTKLDQIVTDLGFA
SYTEAHKDSLNMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSAGWTLVFIALLYLTAPAVGAMARLNISEMMWPNGV
NGEAVSVETIETSPEYNWMATWQKTGLLDWEDKNGDGKIQYYNDKNDAMAEKAAANGWEGNELTNFNRDILVLANPEIAN
LPGWVIGLVAAGGLAAALSTAAGLLLAISSAVSHDLLKGQLTPNMSEKSELLAARISMAAAIVVAVILGLNPPGFAAQTV
ALAFGLAAASIFPALMMGIFSKRVNNVGAVAGMLAGLVFTLVYIFLHKGWFFIPDTNSFADTAEGSLLGIQSTAIGAVGA
VINFAVAFGVSSITKETPQEIKDLVESVRVPAGAGGAVDH
>Mature_600_residues
MDQFTLNLLFVGASFALYIGIAVWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFISMAGLIAFTGYDNSSFLMGW
TGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVAVICLLVASITYVIGQMQGVGIAFGRFLEIDAFWGLLLGSC
VVFAYAVFGGMKGVTYTQVAQYCVLILAYTIPAVFISLQLTGTPIPALGLFSETLNADGTSSGVYLLTKLDQIVTDLGFA
SYTEAHKDSLNMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSAGWTLVFIALLYLTAPAVGAMARLNISEMMWPNGV
NGEAVSVETIETSPEYNWMATWQKTGLLDWEDKNGDGKIQYYNDKNDAMAEKAAANGWEGNELTNFNRDILVLANPEIAN
LPGWVIGLVAAGGLAAALSTAAGLLLAISSAVSHDLLKGQLTPNMSEKSELLAARISMAAAIVVAVILGLNPPGFAAQTV
ALAFGLAAASIFPALMMGIFSKRVNNVGAVAGMLAGLVFTLVYIFLHKGWFFIPDTNSFADTAEGSLLGIQSTAIGAVGA
VINFAVAFGVSSITKETPQEIKDLVESVRVPAGAGGAVDH

Specific function: Unknown

COG id: COG4147

COG function: function code R; Predicted symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

Organism=Escherichia coli, GI1790503, Length=514, Percent_Identity=27.2373540856031, Blast_Score=151, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734
- InterPro:   IPR019899 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 63508; Mature: 63508

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS00457 NA_SOLUT_SYMP_2 ; PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQFTLNLLFVGASFALYIGIAVWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFI
CCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHH
SMAGLIAFTGYDNSSFLMGWTGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVA
HHHHHHEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
VICLLVASITYVIGQMQGVGIAFGRFLEIDAFWGLLLGSCVVFAYAVFGGMKGVTYTQVA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QYCVLILAYTIPAVFISLQLTGTPIPALGLFSETLNADGTSSGVYLLTKLDQIVTDLGFA
HHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCH
SYTEAHKDSLNMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSAGWTLVFIALLYLTA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
PAVGAMARLNISEMMWPNGVNGEAVSVETIETSPEYNWMATWQKTGLLDWEDKNGDGKIQ
HHHHHHHHCCHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEHHHCCCCCCCCCCCCCCEE
YYNDKNDAMAEKAAANGWEGNELTNFNRDILVLANPEIANLPGWVIGLVAAGGLAAALST
EECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AAGLLLAISSAVSHDLLKGQLTPNMSEKSELLAARISMAAAIVVAVILGLNPPGFAAQTV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ALAFGLAAASIFPALMMGIFSKRVNNVGAVAGMLAGLVFTLVYIFLHKGWFFIPDTNSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
DTAEGSLLGIQSTAIGAVGAVINFAVAFGVSSITKETPQEIKDLVESVRVPAGAGGAVDH
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDQFTLNLLFVGASFALYIGIAVWARAGSTSEFYAAGRGVHPVTNGMATAADWMSAASFI
CCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHH
SMAGLIAFTGYDNSSFLMGWTGGYVLLALLLAPYLRKFGKFTVSEFIGDRFYSPTARLVA
HHHHHHEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
VICLLVASITYVIGQMQGVGIAFGRFLEIDAFWGLLLGSCVVFAYAVFGGMKGVTYTQVA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QYCVLILAYTIPAVFISLQLTGTPIPALGLFSETLNADGTSSGVYLLTKLDQIVTDLGFA
HHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCH
SYTEAHKDSLNMVLFTLSLMIGTAGLPHVIMRFFTVPRVSDARWSAGWTLVFIALLYLTA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
PAVGAMARLNISEMMWPNGVNGEAVSVETIETSPEYNWMATWQKTGLLDWEDKNGDGKIQ
HHHHHHHHCCHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEHHHCCCCCCCCCCCCCCEE
YYNDKNDAMAEKAAANGWEGNELTNFNRDILVLANPEIANLPGWVIGLVAAGGLAAALST
EECCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
AAGLLLAISSAVSHDLLKGQLTPNMSEKSELLAARISMAAAIVVAVILGLNPPGFAAQTV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ALAFGLAAASIFPALMMGIFSKRVNNVGAVAGMLAGLVFTLVYIFLHKGWFFIPDTNSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCC
DTAEGSLLGIQSTAIGAVGAVINFAVAFGVSSITKETPQEIKDLVESVRVPAGAGGAVDH
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1356967 [H]