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The map label for this gene is ybiO [H]

Identifier: 110678432

GI number: 110678432

Start: 1046348

End: 1048726

Strand: Direct

Name: ybiO [H]

Synonym: RD1_1096

Alternate gene names: 110678432

Gene position: 1046348-1048726 (Clockwise)

Preceding gene: 110678422

Following gene: 110678433

Centisome position: 25.32

GC content: 57.42

Gene sequence:

>2379_bases
ATGCGCGCCTCCCTTATCGCTCTTTTCATTGTCTTTTTGACGGCCATCCTCGCCTTGCCGGGCGACAGTCATGCACAAAG
CGTCGGCTCGCTTTTTGGCACTGCCGGGGCCGCCGAAGAAGACGGCAGCGCGGATCGCATATCTGACATCATGGAAAAAG
CCGCCGAAAACGGCGTTGGCGTCGTGGTCATTGATCTGGAGGGCAACGTTGTATCGACCGCGGGTCAGCCCCCGCCCAAT
GCCGAAGTCGCGCCGGTCGAAAGCAGCGGTTCCGCCTTGATGAAGGCACAGGATTCACTGGTGAAATTCCGCGCGACCCT
CGTTCAGCGTATCCTTGGGTTGCCGGATGATTTCAACGAGGTGATCTATATCCTGCGGGCCACCAGCCCGGATGGCACCA
TGTGGGCCTATTTTCAGGCGCTTTACATCTCAATGGCGCTTTTTGGGGTGGGCATGCTGGTGCAGCGATATGTCTTTGGA
CGTTATATCGCGCGCTCCATGATCGTGGCCCGGACGCTGGAAAATCCACAGGGCTATTCGGAAAAGATGCCTTGGCTGGT
GTTCCGCTTTTTCCTTGGCGTTATTGGTATTCTGGTTTCCATGGCGGTGGCCTATGCCTTGGGTGCGCTGATTTTCGGCC
CCCTTGAAGATCCGGGCCTGCAGTTCACGGTCAGCGTCATCAATGTGGCGTATTTTTTGAGCCGTGCCGTGGCTGCGCTC
TGGCGGATGATCCTGTCGCCCTATATGCCGCAATATCGCATCCCGCACCTCAATACGCGGGATGCAAAGCGTCTGAACTA
TTGGCTGGTCACACTGGGGACGTTCGATATCGTCCGGCTTCTGTTCACCCTCTGGGTGCGCGAGCTTGGGCTGAATTACG
ATGTCTTTGCCTTCATGGCGTCCCTGCTTGGCGCGGCTGTGGTGGTAGCCAATATCGTGATGGTACTGGTCAATCGCCGC
GCACTCTCCAATGCGATCCGCAAAGGCGAGCCGCGCGAGAATTGCAGTTGGATCATCAAGGCGCTGTCGTCAATCTGGGC
GCCTGCGGTGATCGCCTATATGCTCTACGCATGGTTTCAGGTCACCTATGATCTGGTGCTGGGCACGCCGCCTGCGGTGC
CATTGATTGCGGGAGCCTATGCGATCCTGCTGTCGATCCTCGTGGTCTTTGGCGTAATCAACTTTGGCATCGAACGTGGT
TTTGCCCGCGCCCGCGCGATCCGGGCGCTGAACCAGGGCGACCCTCAGCACACCGACGACGCAGACGATCGCTCGGAGGC
GGAGGATAAAACGCAAGAGCGCATGCATTACGCGCCCAAAACAATGCGCACCTACGAGGAACTGGCGCAGCGGGTTGCGG
GCATTGTGGCCTTTGTCGCGGGCGCATATGCGTTCTTCTACATCTGGGACAATAACAGCACGCAGATGGTCGAAAGCTTT
GCCAATCGGCTGCTGGACGTCATGGTGATCCTGTTTATTGGCTATGTGGTTTATCACGCCTTCCGCATCTGGATCGACAA
CAAGATCGCTGATGAACTGGGCGATGTGAGCGAGGGCGAATTGGGTGATGAGGGCGGTGCGTCGTCTGCGTCCCGGCTGG
CGACGCTGCTGCCGCTGTTTCGCAACTTTATCCTGATCGTGCTGATTGTGACCATCACGCTGATTGTTCTGATGGAGCTG
GGTGTCAATGTCGGGCCGCTCTTTGCCGGTGCGGGTGTTGTGGGGGTTGCCGTGGGTTTTGGCTCACAGGCGTTGGTGCG
CGATATCTTTTCGGGCGGGTTTTTCCTGTTTGATGACGCGTTTCGCAAGGGCGAATATCTGGACGTCGGGGGTGTGAAAG
GCACGGTCGAAAAAATCTCTGTGCGCTCATTCCAGTTGCGCCATCATCTTGGCGCGCTGCACACGATCCCCTTTGGTGAA
ATTCAGGTCATGACGAATTACTCGCGCGATTGGGTGATCATGAAGCTCAAGCTGCGCGTCACCTATGACACCGACGTTGA
GAAAGTGCGTAAGCTGATCAAGAAGCTGGGCGTTGAGTTGCTGGATGACCCCGTGATTGGCGAGAACTTCATCCAACCGC
TGAAATCGCAGGGTGTGGTCGAGATGCAGGACAGCGCGATGATCATCCGCGTCAAATTCATGACCAAGCCGGGCGATCAA
TGGCTGGTGCGCAAGAAAGTCTATGAGGAAATCCGGTCGCTGTTCGAACGCGAAGGCATACATTTCGCGCATAAAGAAGT
CACCGTGCGTCTTGCAGATTCCGACTCCAAGCCAGAGAACCTGACCGAAAAGGAAAAACAGGCCATCACCGCCGCCGCCC
GCGCCGCGGTGGACGATGACGCACTGGAGGGCGGCGCACCCGAGACGGATGACCGCTAG

Upstream 100 bases:

>100_bases
AACACGAATCCAGCGGTACCGCCCGGGATGTTGCGCATTTGCATTGTCTGCCAAGCTCACCTACCGTCTGTTGGAATAAC
TGTGTTGGACATATTCCGCG

Downstream 100 bases:

>100_bases
GCTGCGCGGCGGCCCCGTCGTTGGGCGACAGACACATTTGACGTGTTGATCGGGATGGTGCGTATGGGCCTGTCAAAGGC
GATGGCAAACACAGCTGATT

Product: mechanosensitive ion channel protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MRASLIALFIVFLTAILALPGDSHAQSVGSLFGTAGAAEEDGSADRISDIMEKAAENGVGVVVIDLEGNVVSTAGQPPPN
AEVAPVESSGSALMKAQDSLVKFRATLVQRILGLPDDFNEVIYILRATSPDGTMWAYFQALYISMALFGVGMLVQRYVFG
RYIARSMIVARTLENPQGYSEKMPWLVFRFFLGVIGILVSMAVAYALGALIFGPLEDPGLQFTVSVINVAYFLSRAVAAL
WRMILSPYMPQYRIPHLNTRDAKRLNYWLVTLGTFDIVRLLFTLWVRELGLNYDVFAFMASLLGAAVVVANIVMVLVNRR
ALSNAIRKGEPRENCSWIIKALSSIWAPAVIAYMLYAWFQVTYDLVLGTPPAVPLIAGAYAILLSILVVFGVINFGIERG
FARARAIRALNQGDPQHTDDADDRSEAEDKTQERMHYAPKTMRTYEELAQRVAGIVAFVAGAYAFFYIWDNNSTQMVESF
ANRLLDVMVILFIGYVVYHAFRIWIDNKIADELGDVSEGELGDEGGASSASRLATLLPLFRNFILIVLIVTITLIVLMEL
GVNVGPLFAGAGVVGVAVGFGSQALVRDIFSGGFFLFDDAFRKGEYLDVGGVKGTVEKISVRSFQLRHHLGALHTIPFGE
IQVMTNYSRDWVIMKLKLRVTYDTDVEKVRKLIKKLGVELLDDPVIGENFIQPLKSQGVVEMQDSAMIIRVKFMTKPGDQ
WLVRKKVYEEIRSLFEREGIHFAHKEVTVRLADSDSKPENLTEKEKQAITAAARAAVDDDALEGGAPETDDR

Sequences:

>Translated_792_residues
MRASLIALFIVFLTAILALPGDSHAQSVGSLFGTAGAAEEDGSADRISDIMEKAAENGVGVVVIDLEGNVVSTAGQPPPN
AEVAPVESSGSALMKAQDSLVKFRATLVQRILGLPDDFNEVIYILRATSPDGTMWAYFQALYISMALFGVGMLVQRYVFG
RYIARSMIVARTLENPQGYSEKMPWLVFRFFLGVIGILVSMAVAYALGALIFGPLEDPGLQFTVSVINVAYFLSRAVAAL
WRMILSPYMPQYRIPHLNTRDAKRLNYWLVTLGTFDIVRLLFTLWVRELGLNYDVFAFMASLLGAAVVVANIVMVLVNRR
ALSNAIRKGEPRENCSWIIKALSSIWAPAVIAYMLYAWFQVTYDLVLGTPPAVPLIAGAYAILLSILVVFGVINFGIERG
FARARAIRALNQGDPQHTDDADDRSEAEDKTQERMHYAPKTMRTYEELAQRVAGIVAFVAGAYAFFYIWDNNSTQMVESF
ANRLLDVMVILFIGYVVYHAFRIWIDNKIADELGDVSEGELGDEGGASSASRLATLLPLFRNFILIVLIVTITLIVLMEL
GVNVGPLFAGAGVVGVAVGFGSQALVRDIFSGGFFLFDDAFRKGEYLDVGGVKGTVEKISVRSFQLRHHLGALHTIPFGE
IQVMTNYSRDWVIMKLKLRVTYDTDVEKVRKLIKKLGVELLDDPVIGENFIQPLKSQGVVEMQDSAMIIRVKFMTKPGDQ
WLVRKKVYEEIRSLFEREGIHFAHKEVTVRLADSDSKPENLTEKEKQAITAAARAAVDDDALEGGAPETDDR
>Mature_792_residues
MRASLIALFIVFLTAILALPGDSHAQSVGSLFGTAGAAEEDGSADRISDIMEKAAENGVGVVVIDLEGNVVSTAGQPPPN
AEVAPVESSGSALMKAQDSLVKFRATLVQRILGLPDDFNEVIYILRATSPDGTMWAYFQALYISMALFGVGMLVQRYVFG
RYIARSMIVARTLENPQGYSEKMPWLVFRFFLGVIGILVSMAVAYALGALIFGPLEDPGLQFTVSVINVAYFLSRAVAAL
WRMILSPYMPQYRIPHLNTRDAKRLNYWLVTLGTFDIVRLLFTLWVRELGLNYDVFAFMASLLGAAVVVANIVMVLVNRR
ALSNAIRKGEPRENCSWIIKALSSIWAPAVIAYMLYAWFQVTYDLVLGTPPAVPLIAGAYAILLSILVVFGVINFGIERG
FARARAIRALNQGDPQHTDDADDRSEAEDKTQERMHYAPKTMRTYEELAQRVAGIVAFVAGAYAFFYIWDNNSTQMVESF
ANRLLDVMVILFIGYVVYHAFRIWIDNKIADELGDVSEGELGDEGGASSASRLATLLPLFRNFILIVLIVTITLIVLMEL
GVNVGPLFAGAGVVGVAVGFGSQALVRDIFSGGFFLFDDAFRKGEYLDVGGVKGTVEKISVRSFQLRHHLGALHTIPFGE
IQVMTNYSRDWVIMKLKLRVTYDTDVEKVRKLIKKLGVELLDDPVIGENFIQPLKSQGVVEMQDSAMIIRVKFMTKPGDQ
WLVRKKVYEEIRSLFEREGIHFAHKEVTVRLADSDSKPENLTEKEKQAITAAARAAVDDDALEGGAPETDDR

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=345, Percent_Identity=30.7246376811594, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1789291, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 87499; Mature: 87499

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASLIALFIVFLTAILALPGDSHAQSVGSLFGTAGAAEEDGSADRISDIMEKAAENGVG
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCE
VVVIDLEGNVVSTAGQPPPNAEVAPVESSGSALMKAQDSLVKFRATLVQRILGLPDDFNE
EEEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VIYILRATSPDGTMWAYFQALYISMALFGVGMLVQRYVFGRYIARSMIVARTLENPQGYS
HEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EKMPWLVFRFFLGVIGILVSMAVAYALGALIFGPLEDPGLQFTVSVINVAYFLSRAVAAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
WRMILSPYMPQYRIPHLNTRDAKRLNYWLVTLGTFDIVRLLFTLWVRELGLNYDVFAFMA
HHHHHCCCCCCCCCCCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SLLGAAVVVANIVMVLVNRRALSNAIRKGEPRENCSWIIKALSSIWAPAVIAYMLYAWFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTYDLVLGTPPAVPLIAGAYAILLSILVVFGVINFGIERGFARARAIRALNQGDPQHTDD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ADDRSEAEDKTQERMHYAPKTMRTYEELAQRVAGIVAFVAGAYAFFYIWDNNSTQMVESF
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHH
ANRLLDVMVILFIGYVVYHAFRIWIDNKIADELGDVSEGELGDEGGASSASRLATLLPLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
RNFILIVLIVTITLIVLMELGVNVGPLFAGAGVVGVAVGFGSQALVRDIFSGGFFLFDDA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCHHHHHHHHHCCEEEEEHH
FRKGEYLDVGGVKGTVEKISVRSFQLRHHLGALHTIPFGEIQVMTNYSRDWVIMKLKLRV
HCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEECCCCCEEEEEEEEEE
TYDTDVEKVRKLIKKLGVELLDDPVIGENFIQPLKSQGVVEMQDSAMIIRVKFMTKPGDQ
EECCCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHCCCEEECCCEEEEEEEEECCCCHH
WLVRKKVYEEIRSLFEREGIHFAHKEVTVRLADSDSKPENLTEKEKQAITAAARAAVDDD
HHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCH
ALEGGAPETDDR
HCCCCCCCCCCC
>Mature Secondary Structure
MRASLIALFIVFLTAILALPGDSHAQSVGSLFGTAGAAEEDGSADRISDIMEKAAENGVG
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCE
VVVIDLEGNVVSTAGQPPPNAEVAPVESSGSALMKAQDSLVKFRATLVQRILGLPDDFNE
EEEEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
VIYILRATSPDGTMWAYFQALYISMALFGVGMLVQRYVFGRYIARSMIVARTLENPQGYS
HEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EKMPWLVFRFFLGVIGILVSMAVAYALGALIFGPLEDPGLQFTVSVINVAYFLSRAVAAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
WRMILSPYMPQYRIPHLNTRDAKRLNYWLVTLGTFDIVRLLFTLWVRELGLNYDVFAFMA
HHHHHCCCCCCCCCCCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
SLLGAAVVVANIVMVLVNRRALSNAIRKGEPRENCSWIIKALSSIWAPAVIAYMLYAWFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTYDLVLGTPPAVPLIAGAYAILLSILVVFGVINFGIERGFARARAIRALNQGDPQHTDD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ADDRSEAEDKTQERMHYAPKTMRTYEELAQRVAGIVAFVAGAYAFFYIWDNNSTQMVESF
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHH
ANRLLDVMVILFIGYVVYHAFRIWIDNKIADELGDVSEGELGDEGGASSASRLATLLPLF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
RNFILIVLIVTITLIVLMELGVNVGPLFAGAGVVGVAVGFGSQALVRDIFSGGFFLFDDA
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCHHHHHHHHHCCEEEEEHH
FRKGEYLDVGGVKGTVEKISVRSFQLRHHLGALHTIPFGEIQVMTNYSRDWVIMKLKLRV
HCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEECCCCCEEEEEEEEEE
TYDTDVEKVRKLIKKLGVELLDDPVIGENFIQPLKSQGVVEMQDSAMIIRVKFMTKPGDQ
EECCCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHCCCEEECCCEEEEEEEEECCCCHH
WLVRKKVYEEIRSLFEREGIHFAHKEVTVRLADSDSKPENLTEKEKQAITAAARAAVDDD
HHHHHHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCH
ALEGGAPETDDR
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]