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The map label for this gene is 110678384

Identifier: 110678384

GI number: 110678384

Start: 1005720

End: 1006349

Strand: Reverse

Name: 110678384

Synonym: RD1_1042

Alternate gene names: NA

Gene position: 1006349-1005720 (Counterclockwise)

Preceding gene: 110678387

Following gene: 110678379

Centisome position: 24.35

GC content: 62.22

Gene sequence:

>630_bases
ATGCGCTGGCTCATTGCCTCACTTATTGCCGCCCTGCCCCTTGGCGCCCAGAGCGATACGAGCGGCACGTTTGACTACTA
TGTCCTCTCGCTCAGCTGGTCGCCAAACTGGTGCGCGCTTGAAGGGGATGCGCGCGGGTCAGACCAATGTGATGCGCGCC
ATGATCATGGCTGGATACTCCATGGCCTGTGGCCGCAATACGAAAGCGGCTTTCCCGACTACTGTCAGACCTCCGAACGC
GCGCCCTCCCGGCAGATGACCGCTGGCATGGCCGATATCATGGGCACCTCCGGTCTGGCCTGGCACCAGTGGAAAAAGCA
TGGCACCTGTGCCGGGGTGAGTGCCGCGCAGTATTTTGACACATCGCGCGAGGCTTACGCGCGGATAAAGCGCCCGGAAA
TTCTGCGCCGGTTGAGCGAACCTGTGCGCATCGCGCCGCAGGTCGTTGAACAAGCCTTTCTTGAGGCAAACCCCGAATTG
CGCCCCGATCAGATCACGATCACTTGCCGCGACGGACATATCCAAGAGGCACGGGTTTGCCTGACCCGCGCGCTTGAGCC
GCGCCAGTGCGGGCGCGATGTCATCCGGGACTGTAGCGCGAAAAACGCGCTGTTCACCCCGGTCCGCTAG

Upstream 100 bases:

>100_bases
CCAATCGCCTTGAAGGGCGGTTCCGAAGCCTCGGAACGGTTTCCATTGTGGGGGAACTGTCGCAGTATATAATCAGCAAA
ATCCCATAAGGAAAGCCCCA

Downstream 100 bases:

>100_bases
GGCGTCAGAATCGTGCTGCCCGTGGTTTTGCGTGCTTCCAGCGCGCGATGGGCCTCAGCCACATCATCGAGCGCAAATCG
CTGGTCGATGCGAATCTTCA

Product: ribonuclease T2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRWLIASLIAALPLGAQSDTSGTFDYYVLSLSWSPNWCALEGDARGSDQCDARHDHGWILHGLWPQYESGFPDYCQTSER
APSRQMTAGMADIMGTSGLAWHQWKKHGTCAGVSAAQYFDTSREAYARIKRPEILRRLSEPVRIAPQVVEQAFLEANPEL
RPDQITITCRDGHIQEARVCLTRALEPRQCGRDVIRDCSAKNALFTPVR

Sequences:

>Translated_209_residues
MRWLIASLIAALPLGAQSDTSGTFDYYVLSLSWSPNWCALEGDARGSDQCDARHDHGWILHGLWPQYESGFPDYCQTSER
APSRQMTAGMADIMGTSGLAWHQWKKHGTCAGVSAAQYFDTSREAYARIKRPEILRRLSEPVRIAPQVVEQAFLEANPEL
RPDQITITCRDGHIQEARVCLTRALEPRQCGRDVIRDCSAKNALFTPVR
>Mature_209_residues
MRWLIASLIAALPLGAQSDTSGTFDYYVLSLSWSPNWCALEGDARGSDQCDARHDHGWILHGLWPQYESGFPDYCQTSER
APSRQMTAGMADIMGTSGLAWHQWKKHGTCAGVSAAQYFDTSREAYARIKRPEILRRLSEPVRIAPQVVEQAFLEANPEL
RPDQITITCRDGHIQEARVCLTRALEPRQCGRDVIRDCSAKNALFTPVR

Specific function: One of the few RNases that cleave the phosphodiester bond between any two nucleotide. Shows a preference for adenylic acid [H]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasm. Cytoplasm. Note=An RNase I-like form (periplasmic) and RNase I*-like form (cytoplasmic) appear to be isoforms apparently encoded by the same gene. The cytoplasmic form is less active towards natural polymer RNA [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase T2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001568
- InterPro:   IPR018188 [H]

Pfam domain/function: PF00445 Ribonuclease_T2 [H]

EC number: NA

Molecular weight: Translated: 23465; Mature: 23465

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00530 RNASE_T2_1 ; PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWLIASLIAALPLGAQSDTSGTFDYYVLSLSWSPNWCALEGDARGSDQCDARHDHGWIL
CHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEE
HGLWPQYESGFPDYCQTSERAPSRQMTAGMADIMGTSGLAWHQWKKHGTCAGVSAAQYFD
ECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHH
TSREAYARIKRPEILRRLSEPVRIAPQVVEQAFLEANPELRPDQITITCRDGHIQEARVC
CCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHH
LTRALEPRQCGRDVIRDCSAKNALFTPVR
HHHCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRWLIASLIAALPLGAQSDTSGTFDYYVLSLSWSPNWCALEGDARGSDQCDARHDHGWIL
CHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEE
HGLWPQYESGFPDYCQTSERAPSRQMTAGMADIMGTSGLAWHQWKKHGTCAGVSAAQYFD
ECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHH
TSREAYARIKRPEILRRLSEPVRIAPQVVEQAFLEANPELRPDQITITCRDGHIQEARVC
CCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHH
LTRALEPRQCGRDVIRDCSAKNALFTPVR
HHHCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7685334 [H]