Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is 110678367

Identifier: 110678367

GI number: 110678367

Start: 990208

End: 992115

Strand: Direct

Name: 110678367

Synonym: RD1_1024

Alternate gene names: NA

Gene position: 990208-992115 (Clockwise)

Preceding gene: 110678366

Following gene: 110678368

Centisome position: 23.96

GC content: 60.43

Gene sequence:

>1908_bases
ATGCGCATGCGGTTGATGGTGATGGTCATGGCAGCCCTGTCTTTCTGGGCCTCTGCGCTTGCGGCTCAACCCTTGCTGAT
GGAGGGCACCAATACGGTGTTTCAGCGCGTGCTGACCCGCCCCGCCGCCACCCTGCACAGTGCCGTTGATGGCGCCGTGA
TCGAACATATCCCCGCGTTTCAGCCGTTTTACGTCTTTGCCGATCAGGGCGCATGGAAACAGATCGGACCGTCCATTTCG
AGGGAGCCGACCGGATGGGTGAAAACGGACCAGACCGTTGAGTGGAAACAGAATATCGTCGGTGCCTTTACGAATGCCGC
CGGGCGGGAGCGCCAGCTGGTGTTTCAGAGCGAAGAGGATTTGCGCTGGCTGTTGAACCACGAAGCCTTGCCGCAGGTGC
AGGAGCGGTTGCTGGCCGAGGCCTCGGCGGGGATATCGCAGGGCAACAACGGTGTTGTCTCTGTTGAGCCGGAAGAGTTC
GTCAACATCCGCGAAGACCTCTATGTGATGCCGATCCTCGATTTTGTCGAAGACCTGCATCCGCTCAACTACGAGGATAT
TCTGTTGATGGAGGTGGCCTCTGTCCCGCTCAAGGCGGAGAGTGGCGTGCAAAACAACGCGGATCAGGGCAATGCGGCCT
TTGACGTCGGGATCGTCTTTGTGTTCGACACCACCCAGTCGATGGAGACCTATATCGCGCGCACGCAGAAAGTCCTGCAA
AACACGGTTCAGCAGATCGCAGGGACCGAGATTGGCAAGCTGGTGAACTTTGGCGCCATCGGGTTTCGCGACAACACGGA
TGCGGTGCCCGAACTGGAATACCGCACCAAGGTCCTTGCGGATATCAAACGGCGCGATGACCAGTCCGAAGTGTTGAACG
CGATTGCCAACACACGGGTGGCCATCGCCAATTCGCCCGGTTTCAACGAAGACAGTCTGGCGGGTGTCGAGGATGCGATT
GACCTGATTGACTGGCAGCAAGAGGGATCGGGCGATCCGATTGATGCACGCTATATCATTCTGGTCACGGACGCCGGGCC
GAAAGACCCGCGTGATCCCAATGCACGCTCGCAGATCGGGGTTGAGGAGTTGCAAGCCGATGCAGAGGGCAAGAACATCG
TCACGATGACGCTGCACCTCAAAACGCCGACCGGGGGCGAGGCAAACCATGCCTATGCCGAAAGCCGCTACCGTGCGCTG
TCGACCTTTGCGGGTCGTCAGTTCTATTTCCCCATCGAGGGCGGATCAGAGGAAGCGTTCGAGGGTGTCGCAACCCGGCT
GGTCACGGCCATCACCGATCACGTGCGCACCGCGCGCGGCGAAACATCAATCCTGAGCGAGGACGAGGCCGGCGAAGATC
TGGTGGCCTTGGGCCGCGCCATGCGCCTGGCCTATCTGGGCTCACAACGCGGCACGCAGGCCCCGGATGTGATCCGCGGG
TGGGTCAGTGACAAGGCGGTGGAAGCGCCGCAATCGCTCGCTGTGGAGCCGCGCTTGCTGATCACCAAGAATGAGATGGC
GACAATGGCGGAACTGCTGGACAACCTGATCCGTCTGGGGGAGCAAAGCCAGGGTGGCGATGATGCGATGAACTTCTTTA
CGCAGGTGCGGGGCGTGATTGCGGATATGGCAACCAACCCGGACCGGCGGCTGAACACGCAAGCCGACACGCTGGGCGGG
GCGTTGGAATACCTTGAGCAACTGCCCTATCGCAGCCAGCTTTTGCAAATGACCGAAGACCGCTGGGCGCAAAGTGCCAT
GCTGCGCCGGTCCATCATCGACGGGATGCGCCAGAAGCTGACGCAATACCGCAAGTGGCTGTTTGACCCGCAGGTCTGGA
CCGCGCTGCACGACGGGGCCGATGATGGGGAGCTGGTCTTTGCCATGCCCTTTGACGTTTTGCCCTGA

Upstream 100 bases:

>100_bases
AGCGAAAAGCTGGCTGCCTTGTGCACACGGATGGCCGATATGACAGACACATTGGTGCAGGGCGCCGTCACCGATTATTG
TGGCAATTAGGGAGATGGGT

Downstream 100 bases:

>100_bases
GGCGCGGCGATGGCCTATTCGCTCGCAATTGACGATCTGACGGTGACGCTTGGCGATGCAGAACGCCGCTTTACGCTGCA
AGCGGGGCAGTGGTCGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: PpkA-Related Protein; Serine/Threonine Protein Kinase; Serine/Threonine Protein Kinase PpkA; Von Willebrand Factor Type A Domain-Containing Protein; Protein Kinase; Exported Protein

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS
REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF
VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ
NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI
DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL
STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG
WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG
ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP

Sequences:

>Translated_635_residues
MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS
REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF
VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ
NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI
DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL
STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG
WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG
ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP
>Mature_635_residues
MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS
REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF
VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ
NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI
DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL
STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG
WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG
ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70221; Mature: 70221

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAF
CCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCC
QPFYVFADQGAWKQIGPSISREPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEED
CCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHH
LRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEFVNIREDLYVMPILDFVEDLH
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHEEHHHHHHHHHHHC
PLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHH
NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRV
HHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEE
AIANSPGFNEDSLAGVEDAIDLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIG
EEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCC
VEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRALSTFAGRQFYFPIEGGSEEAF
HHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
EGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVI
HHHHHHHCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ADMATNPDRRLNTQADTLGGALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKL
HHHCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP
HHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAF
CCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCC
QPFYVFADQGAWKQIGPSISREPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEED
CCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHH
LRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEFVNIREDLYVMPILDFVEDLH
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHEEHHHHHHHHHHHC
PLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHH
NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRV
HHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEE
AIANSPGFNEDSLAGVEDAIDLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIG
EEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCC
VEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRALSTFAGRQFYFPIEGGSEEAF
HHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
EGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVI
HHHHHHHCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ADMATNPDRRLNTQADTLGGALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKL
HHHCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP
HHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA