| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678249
Identifier: 110678249
GI number: 110678249
Start: 875312
End: 876289
Strand: Direct
Name: 110678249
Synonym: RD1_0902
Alternate gene names: NA
Gene position: 875312-876289 (Clockwise)
Preceding gene: 110678248
Following gene: 110678250
Centisome position: 21.18
GC content: 59.41
Gene sequence:
>978_bases GTGCGGAATAGGTTTCGCCTGATCGGGGCGCTTGTCTGCGCCCTTTTCGGTTTTGCAGGGCAGGTTCTCGCCGAGGACCT GCCCACTATACGTGCGGCGGTACTGAAAATCGGGACGGTCAATTGGGAGTTGGCGACTATCACCGACAACCAGCTCGACC GTGAGAACGGCTTTGTGCTGGAGGTTCAGCCCTTTGCGGATAACGGGGCCACGCGTATCGCGGTTGAAGGCGGCGAAGCG GATATGGCTGTCGCCGATTGGATATGGGTGGCGCGGCAGCGGGCAGCGGGCAAGGACTATGTCTTTATCCCCTATTCCAA GGCCGTGGGCGGCCTGATTGTGACTGACACCAGCACCGCCGAAACATTGCAGGACCTGCAGGGCGGCAAGATCGGCATTG CCGGGGGGCCGTTGGATAAATCATGGCTGATCCTGCAGGCCTATGCGCAACAGCAATATGGCTTTGATCTGAAGGCCGGC ACAGAACAGGTTTTTGGCGCGCCGCCCCTGATTTTTAAATCCGCGCTTAATGATGACTACGCCGGGGCGATCAATTTCTG GCACTTTCTGGCCAAGGGCAAATCGGCGGGCATGAGGGAACTGATCTCCGTTCAGGAGGCGGGAGCGGCATTGGGGTTGG ATACCGACACGCCCCTGTTGGGATATTACGTCAAGGAAAGTTTCCTCGCAGAGAACCCCGATATTGCGCAGTCCTTCTTT GAAGCGACGCGCGCGGCAAAGGATATGCTGGCCACGTCTGATGCCGCATGGGAGGCTGTGCGTCCCCGGATGAACGCCAG CACGGATGCGGAATTCGAACAACTCAAGGCCGATTGGATCGCGGGCATTCCGGAACGCGGTCCGGTCGACGGGCAGGCTG CCGAAAAGATGCTGGCGCTGATGAAAGAGCTTGGCGGTCCGGAGCTTGTCGGCCCGATGACCGCGATGCCACCCGGCCTG TTTGCAGACGTTAAATAG
Upstream 100 bases:
>100_bases GAAGTCGAAGACGATGGCTATGAGCTTGACGATGTGATCTGCAAGGGGGGTGATCAGTTCGACATTACGTTGGACAAGGA CCTCAACGAAACCGGTCGCC
Downstream 100 bases:
>100_bases CGCGGTGATGCACAGCGCGCGGCTCACTCCTTTTCTGTCACTGGCCGGGTTACTGGGCATGTGGGTGGTCGCTGCGATGC TGACACAGGATGCGCAAATC
Product: ABC transporter, substrate-binding protein, putative
Products: NA
Alternate protein names: NMT1/THI5 Like Domain Protein
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MRNRFRLIGALVCALFGFAGQVLAEDLPTIRAAVLKIGTVNWELATITDNQLDRENGFVLEVQPFADNGATRIAVEGGEA DMAVADWIWVARQRAAGKDYVFIPYSKAVGGLIVTDTSTAETLQDLQGGKIGIAGGPLDKSWLILQAYAQQQYGFDLKAG TEQVFGAPPLIFKSALNDDYAGAINFWHFLAKGKSAGMRELISVQEAGAALGLDTDTPLLGYYVKESFLAENPDIAQSFF EATRAAKDMLATSDAAWEAVRPRMNASTDAEFEQLKADWIAGIPERGPVDGQAAEKMLALMKELGGPELVGPMTAMPPGL FADVK
Sequences:
>Translated_325_residues MRNRFRLIGALVCALFGFAGQVLAEDLPTIRAAVLKIGTVNWELATITDNQLDRENGFVLEVQPFADNGATRIAVEGGEA DMAVADWIWVARQRAAGKDYVFIPYSKAVGGLIVTDTSTAETLQDLQGGKIGIAGGPLDKSWLILQAYAQQQYGFDLKAG TEQVFGAPPLIFKSALNDDYAGAINFWHFLAKGKSAGMRELISVQEAGAALGLDTDTPLLGYYVKESFLAENPDIAQSFF EATRAAKDMLATSDAAWEAVRPRMNASTDAEFEQLKADWIAGIPERGPVDGQAAEKMLALMKELGGPELVGPMTAMPPGL FADVK >Mature_325_residues MRNRFRLIGALVCALFGFAGQVLAEDLPTIRAAVLKIGTVNWELATITDNQLDRENGFVLEVQPFADNGATRIAVEGGEA DMAVADWIWVARQRAAGKDYVFIPYSKAVGGLIVTDTSTAETLQDLQGGKIGIAGGPLDKSWLILQAYAQQQYGFDLKAG TEQVFGAPPLIFKSALNDDYAGAINFWHFLAKGKSAGMRELISVQEAGAALGLDTDTPLLGYYVKESFLAENPDIAQSFF EATRAAKDMLATSDAAWEAVRPRMNASTDAEFEQLKADWIAGIPERGPVDGQAAEKMLALMKELGGPELVGPMTAMPPGL FADVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34938; Mature: 34938
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNRFRLIGALVCALFGFAGQVLAEDLPTIRAAVLKIGTVNWELATITDNQLDRENGFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEE EVQPFADNGATRIAVEGGEADMAVADWIWVARQRAAGKDYVFIPYSKAVGGLIVTDTSTA EEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCEEEECCCHH ETLQDLQGGKIGIAGGPLDKSWLILQAYAQQQYGFDLKAGTEQVFGAPPLIFKSALNDDY HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHCCCCH AGAINFWHFLAKGKSAGMRELISVQEAGAALGLDTDTPLLGYYVKESFLAENPDIAQSFF HHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH EATRAAKDMLATSDAAWEAVRPRMNASTDAEFEQLKADWIAGIPERGPVDGQAAEKMLAL HHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MKELGGPELVGPMTAMPPGLFADVK HHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRNRFRLIGALVCALFGFAGQVLAEDLPTIRAAVLKIGTVNWELATITDNQLDRENGFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEE EVQPFADNGATRIAVEGGEADMAVADWIWVARQRAAGKDYVFIPYSKAVGGLIVTDTSTA EEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCEEEECCCHH ETLQDLQGGKIGIAGGPLDKSWLILQAYAQQQYGFDLKAGTEQVFGAPPLIFKSALNDDY HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHCCCCH AGAINFWHFLAKGKSAGMRELISVQEAGAALGLDTDTPLLGYYVKESFLAENPDIAQSFF HHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH EATRAAKDMLATSDAAWEAVRPRMNASTDAEFEQLKADWIAGIPERGPVDGQAAEKMLAL HHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MKELGGPELVGPMTAMPPGLFADVK HHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA