| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is moxJ [H]
Identifier: 110678239
GI number: 110678239
Start: 868107
End: 868952
Strand: Direct
Name: moxJ [H]
Synonym: RD1_0892
Alternate gene names: 110678239
Gene position: 868107-868952 (Clockwise)
Preceding gene: 110678238
Following gene: 110678240
Centisome position: 21.0
GC content: 55.91
Gene sequence:
>846_bases ATGCCTGCATGGGCTGAAAAATACCAGCGCCTGGTTGTGACCCTTCTCCTTGGGTTCTGCCTTGCGGGGTCTGCAGGCGC ACAAACGTCTGATTTGGTTTCAAGCAAAGCCTTACGCGTTTGTGCGGACCCCGCAAACTACCCGATGTCTACCCGTGATG AAGACGGCTATGAAAACAAGCTGGCTGAACTTGTCGGCGCCAAGCTCGAACTTCCCGTGCAGTATACCTGGTTTCCGATG GCAACCGGGTTTGTGCGCAACACATTGAACGCCAAACGCTGCGATCTGATCATCGGCTATGCGCAGGGCCATGAGCTGGT GTTGAACACCAACCACTATTTCACCTCCGTATATACCATCATCGTGCCACAGGACAGCGATCTGGCTGATGTGAAATCGC TTGCTGATCCAGCCCTCAAAGGGCGTAAACTGGGCATTATCGCAGGCACACCGCCGTCGGCGCATCTTGCGCGGCACGGG CTGATTGCAAAGGCGAAAGCTTACAATCTCGTGGTGGACCGACGTGTCGAGAACCCGGCGATTGACATGCTTGACGACCT CAGCGCAGGCGAAATTGACGCCGCCGTTTTGTGGGGCCCATTGGGCGGGCCGCTGGTCAAATCCAGCTATCCCGGTTTCA AAGTGATCCCGCTGATCAGCGAGCAATCACCGCCGCGTCTTTTCTTTCGGATCACGATGGGCGTTCGTCTGGGCGAAAAG GTCTGGCAGCGTAACCTCAATTCGCTGATCCGCCGCAATCAGGACGAAATCAACAGCTTGCTCGTGGATGCTGGTGTGCC GCTTGTGACCGATCTTGGCACTGAGGTGTTGGAGATCTCGAATTGA
Upstream 100 bases:
>100_bases GACATATATGTCTATCTGAAGGCACGTGGAACCGACGCGCTGCCGCGCGGACGTCCGGCCAAGAAAGAAGCCAAATCGGA TGCTATTCGTGAGGACGAAA
Downstream 100 bases:
>100_bases TCAAAATCCTGCTGGCAGCGGCATTTCTCACGGTGGCGCAGCACGCAGGGGCACAAACCGTGCCCGAGCCTTCAGATTAC CGAATGGATCACTACCGCAG
Product: putative methanol oxidation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MPAWAEKYQRLVVTLLLGFCLAGSAGAQTSDLVSSKALRVCADPANYPMSTRDEDGYENKLAELVGAKLELPVQYTWFPM ATGFVRNTLNAKRCDLIIGYAQGHELVLNTNHYFTSVYTIIVPQDSDLADVKSLADPALKGRKLGIIAGTPPSAHLARHG LIAKAKAYNLVVDRRVENPAIDMLDDLSAGEIDAAVLWGPLGGPLVKSSYPGFKVIPLISEQSPPRLFFRITMGVRLGEK VWQRNLNSLIRRNQDEINSLLVDAGVPLVTDLGTEVLEISN
Sequences:
>Translated_281_residues MPAWAEKYQRLVVTLLLGFCLAGSAGAQTSDLVSSKALRVCADPANYPMSTRDEDGYENKLAELVGAKLELPVQYTWFPM ATGFVRNTLNAKRCDLIIGYAQGHELVLNTNHYFTSVYTIIVPQDSDLADVKSLADPALKGRKLGIIAGTPPSAHLARHG LIAKAKAYNLVVDRRVENPAIDMLDDLSAGEIDAAVLWGPLGGPLVKSSYPGFKVIPLISEQSPPRLFFRITMGVRLGEK VWQRNLNSLIRRNQDEINSLLVDAGVPLVTDLGTEVLEISN >Mature_280_residues PAWAEKYQRLVVTLLLGFCLAGSAGAQTSDLVSSKALRVCADPANYPMSTRDEDGYENKLAELVGAKLELPVQYTWFPMA TGFVRNTLNAKRCDLIIGYAQGHELVLNTNHYFTSVYTIIVPQDSDLADVKSLADPALKGRKLGIIAGTPPSAHLARHGL IAKAKAYNLVVDRRVENPAIDMLDDLSAGEIDAAVLWGPLGGPLVKSSYPGFKVIPLISEQSPPRLFFRITMGVRLGEKV WQRNLNSLIRRNQDEINSLLVDAGVPLVTDLGTEVLEISN
Specific function: May be involved in the assemblage of active methanol dehydrogenase and/or its cofactor PQQ in the periplasm [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022455 - InterPro: IPR001638 - InterPro: IPR006311 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 30656; Mature: 30524
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAWAEKYQRLVVTLLLGFCLAGSAGAQTSDLVSSKALRVCADPANYPMSTRDEDGYENK CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHH LAELVGAKLELPVQYTWFPMATGFVRNTLNAKRCDLIIGYAQGHELVLNTNHYFTSVYTI HHHHHCCCEECCEEEEEEHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCEEEEEEEE IVPQDSDLADVKSLADPALKGRKLGIIAGTPPSAHLARHGLIAKAKAYNLVVDRRVENPA EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCHHHHHHHEEEEECCCCCCH IDMLDDLSAGEIDAAVLWGPLGGPLVKSSYPGFKVIPLISEQSPPRLFFRITMGVRLGEK HHHHHCCCCCCCCEEEEECCCCCCHHCCCCCCEEEEEEECCCCCCEEEEEEEECCHHHHH VWQRNLNSLIRRNQDEINSLLVDAGVPLVTDLGTEVLEISN HHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCCEEECC >Mature Secondary Structure PAWAEKYQRLVVTLLLGFCLAGSAGAQTSDLVSSKALRVCADPANYPMSTRDEDGYENK CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCHHHH LAELVGAKLELPVQYTWFPMATGFVRNTLNAKRCDLIIGYAQGHELVLNTNHYFTSVYTI HHHHHCCCEECCEEEEEEHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCEEEEEEEE IVPQDSDLADVKSLADPALKGRKLGIIAGTPPSAHLARHGLIAKAKAYNLVVDRRVENPA EEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCHHHHHHHEEEEECCCCCCH IDMLDDLSAGEIDAAVLWGPLGGPLVKSSYPGFKVIPLISEQSPPRLFFRITMGVRLGEK HHHHHCCCCCCCCEEEEECCCCCCHHCCCCCCEEEEEEECCCCCCEEEEEEEECCHHHHH VWQRNLNSLIRRNQDEINSLLVDAGVPLVTDLGTEVLEISN HHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2116368 [H]