Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is 110678165

Identifier: 110678165

GI number: 110678165

Start: 791272

End: 792504

Strand: Direct

Name: 110678165

Synonym: RD1_0808

Alternate gene names: NA

Gene position: 791272-792504 (Clockwise)

Preceding gene: 110678164

Following gene: 110678167

Centisome position: 19.14

GC content: 47.2

Gene sequence:

>1233_bases
ATGAATATTGAGTTCCCTTTCACGGTACCCACTCTTCGGGTCGATCAGCGACTAGGAAGTTTTTATGTTGCCGTACTTCC
AGCTGAATTGCTGTTACGTGTTTGCGCCAGCGACAGGATGAGTGCGTCACTTAATCCAGATGGTGTAGGTTACACACTCG
AAGGTACTCAGCGGGTGATACAAGACAAACGATTATCAGAAATTGCTGCTTACATTAATCGTGTTGATTCGGCATTTCCA
AACTCAATCATCGTAGCAGCGAACTATGACCGAGAGACTGGTTTCGACCAAACTGAGAATGAAGACATTGCGAAGGAAGA
AGGCGAGACTAACGATGGAATTTCAAGCGCCTGGACCGTGCAGACAACAGACAACGGATGCCACAAGCTAACGATTCCAT
CTGAAGCCAAACTTGCAGCGGTAATTGATGGACAGCACCGACTGTTCTCGTTCGCGAAGGCTAGTCAAGAAGCCTTGCAG
AGCATGAACTTGATTTGCTCGATATTTATCGATCTCCCCAAAGCTTTACAGGCGCAAATCTTTGCCACCATTAACTCAAC
TCAAAAACGAGTGGACCGCAGTCTTACCTACGAACTTTTTGGTTACAACGTTTCTGACGAACCAGAAGAGTATTGGACAC
CGGACAAGCTCGCCGTTTTCTTTGCTCGAAAGCTGGCTACAGACTCAGGTTCACCGCTTCGAGGCCGTATAACAGTTGCG
CCGAAAAGGGACACAAGGCTTGAGCAGATTGCAGCTGACGCAGCGTGGAAGATATCTACCGCCGTCGCTGTGGACGGAAT
CCTGAGGTTGTACTCAAGTAATCCGAAGCGAGATGCCAATCTGATGCGTGAAGGAGATGCTCATACCAGAGAAGTACTTT
TGAAAGGCCCAAAGGACAAATCGCCACTTCGAAGCGCTTACATTGAGGGCAACGACGCAGTAATATTTAAGATGGTGCTG
AACTATCTCAAAGCCGCTGAGGAGGTCTTTTGGAAAAACGCACAAGAAGGCTCCTATATCTTTCGCACGGTGGGTGTGCA
GGCTATTTTTGATATACTTAGAAAACTTGCATCTGAGGCATTTGATAAGAGAGACATCAGTTCTGGATACTTCCAAGCTG
TTTTGGACCCGGCCAAAGACATTGATTTTTCTTCTACCGAATTCCAGAATGCTTCAGGGTCGGGCCGGACTTTCATTCGC
AAAACAATTGAGGAAGCTGTGGGAGTCTCCTAA

Upstream 100 bases:

>100_bases
GCGACGAGCTTACCTATCAAAACGCCCCGATTGACGCTGCCGCGGGCGGCAGCACAACACGATCTGTCAAAGGCAACCTG
AACGATTTTAAGGTAGACTG

Downstream 100 bases:

>100_bases
AGATCGAAATTCACGGAGTTTCAATAGCCATTTAATCATATAAGCGGAACCGGCCTGCTCTATTAACAGTTGTTCTTTTG
AAGCCTCTTGCATAGCTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Dgqhr Domain Containing Protein; DGQHR Domain-Containing Protein

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP
NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ
SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA
PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL
NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR
KTIEEAVGVS

Sequences:

>Translated_410_residues
MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP
NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ
SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA
PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL
NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR
KTIEEAVGVS
>Mature_410_residues
MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP
NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ
SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA
PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL
NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR
KTIEEAVGVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45503; Mature: 45503

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH
QDKRLSEIAAYINRVDSAFPNSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
QTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQSMNLICSIFIDLPKALQAQI
EECCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
FATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA
HHHHHHHHHHHHHHHEEHEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEC
PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCCCCC
SPLRSAYIEGNDAVIFKMVLNYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEA
CCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIRKTIEEAVGVS
HHHHCCCCHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH
QDKRLSEIAAYINRVDSAFPNSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEE
QTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQSMNLICSIFIDLPKALQAQI
EECCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
FATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA
HHHHHHHHHHHHHHHEEHEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEC
PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCCCCC
SPLRSAYIEGNDAVIFKMVLNYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEA
CCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIRKTIEEAVGVS
HHHHCCCCHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA