| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678165
Identifier: 110678165
GI number: 110678165
Start: 791272
End: 792504
Strand: Direct
Name: 110678165
Synonym: RD1_0808
Alternate gene names: NA
Gene position: 791272-792504 (Clockwise)
Preceding gene: 110678164
Following gene: 110678167
Centisome position: 19.14
GC content: 47.2
Gene sequence:
>1233_bases ATGAATATTGAGTTCCCTTTCACGGTACCCACTCTTCGGGTCGATCAGCGACTAGGAAGTTTTTATGTTGCCGTACTTCC AGCTGAATTGCTGTTACGTGTTTGCGCCAGCGACAGGATGAGTGCGTCACTTAATCCAGATGGTGTAGGTTACACACTCG AAGGTACTCAGCGGGTGATACAAGACAAACGATTATCAGAAATTGCTGCTTACATTAATCGTGTTGATTCGGCATTTCCA AACTCAATCATCGTAGCAGCGAACTATGACCGAGAGACTGGTTTCGACCAAACTGAGAATGAAGACATTGCGAAGGAAGA AGGCGAGACTAACGATGGAATTTCAAGCGCCTGGACCGTGCAGACAACAGACAACGGATGCCACAAGCTAACGATTCCAT CTGAAGCCAAACTTGCAGCGGTAATTGATGGACAGCACCGACTGTTCTCGTTCGCGAAGGCTAGTCAAGAAGCCTTGCAG AGCATGAACTTGATTTGCTCGATATTTATCGATCTCCCCAAAGCTTTACAGGCGCAAATCTTTGCCACCATTAACTCAAC TCAAAAACGAGTGGACCGCAGTCTTACCTACGAACTTTTTGGTTACAACGTTTCTGACGAACCAGAAGAGTATTGGACAC CGGACAAGCTCGCCGTTTTCTTTGCTCGAAAGCTGGCTACAGACTCAGGTTCACCGCTTCGAGGCCGTATAACAGTTGCG CCGAAAAGGGACACAAGGCTTGAGCAGATTGCAGCTGACGCAGCGTGGAAGATATCTACCGCCGTCGCTGTGGACGGAAT CCTGAGGTTGTACTCAAGTAATCCGAAGCGAGATGCCAATCTGATGCGTGAAGGAGATGCTCATACCAGAGAAGTACTTT TGAAAGGCCCAAAGGACAAATCGCCACTTCGAAGCGCTTACATTGAGGGCAACGACGCAGTAATATTTAAGATGGTGCTG AACTATCTCAAAGCCGCTGAGGAGGTCTTTTGGAAAAACGCACAAGAAGGCTCCTATATCTTTCGCACGGTGGGTGTGCA GGCTATTTTTGATATACTTAGAAAACTTGCATCTGAGGCATTTGATAAGAGAGACATCAGTTCTGGATACTTCCAAGCTG TTTTGGACCCGGCCAAAGACATTGATTTTTCTTCTACCGAATTCCAGAATGCTTCAGGGTCGGGCCGGACTTTCATTCGC AAAACAATTGAGGAAGCTGTGGGAGTCTCCTAA
Upstream 100 bases:
>100_bases GCGACGAGCTTACCTATCAAAACGCCCCGATTGACGCTGCCGCGGGCGGCAGCACAACACGATCTGTCAAAGGCAACCTG AACGATTTTAAGGTAGACTG
Downstream 100 bases:
>100_bases AGATCGAAATTCACGGAGTTTCAATAGCCATTTAATCATATAAGCGGAACCGGCCTGCTCTATTAACAGTTGTTCTTTTG AAGCCTCTTGCATAGCTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Dgqhr Domain Containing Protein; DGQHR Domain-Containing Protein
Number of amino acids: Translated: 410; Mature: 410
Protein sequence:
>410_residues MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR KTIEEAVGVS
Sequences:
>Translated_410_residues MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR KTIEEAVGVS >Mature_410_residues MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVIQDKRLSEIAAYINRVDSAFP NSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTVQTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQ SMNLICSIFIDLPKALQAQIFATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDKSPLRSAYIEGNDAVIFKMVL NYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEAFDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIR KTIEEAVGVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45503; Mature: 45503
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH QDKRLSEIAAYINRVDSAFPNSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTV HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEE QTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQSMNLICSIFIDLPKALQAQI EECCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH FATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA HHHHHHHHHHHHHHHEEHEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEC PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCCCCC SPLRSAYIEGNDAVIFKMVLNYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEA CCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIRKTIEEAVGVS HHHHCCCCHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MNIEFPFTVPTLRVDQRLGSFYVAVLPAELLLRVCASDRMSASLNPDGVGYTLEGTQRVI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHH QDKRLSEIAAYINRVDSAFPNSIIVAANYDRETGFDQTENEDIAKEEGETNDGISSAWTV HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEE QTTDNGCHKLTIPSEAKLAAVIDGQHRLFSFAKASQEALQSMNLICSIFIDLPKALQAQI EECCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH FATINSTQKRVDRSLTYELFGYNVSDEPEEYWTPDKLAVFFARKLATDSGSPLRGRITVA HHHHHHHHHHHHHHHEEHEECCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEC PKRDTRLEQIAADAAWKISTAVAVDGILRLYSSNPKRDANLMREGDAHTREVLLKGPKDK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHCCCCCCC SPLRSAYIEGNDAVIFKMVLNYLKAAEEVFWKNAQEGSYIFRTVGVQAIFDILRKLASEA CCHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH FDKRDISSGYFQAVLDPAKDIDFSSTEFQNASGSGRTFIRKTIEEAVGVS HHHHCCCCHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA