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The map label for this gene is petC [H]

Identifier: 110677949

GI number: 110677949

Start: 547983

End: 548771

Strand: Direct

Name: petC [H]

Synonym: RD1_0565

Alternate gene names: 110677949

Gene position: 547983-548771 (Clockwise)

Preceding gene: 110677948

Following gene: 110677950

Centisome position: 13.26

GC content: 54.75

Gene sequence:

>789_bases
ATGTTCAGAAGACTTATACTGAGTGCTGTGGCGACCTTTGGGTTTGCCACGGCGAGTATGGCGGCTGGCGCCTATGATAC
GCACATCGAGGATTTTGATTTCTCGTTCGAAGGACCTTTCGGGACCTATGATCAGAACCAGCTGCAGCGTGGCCTTCAGG
TTTACACCGAAGTTTGTGCCGCATGCCATGGACTGAAGTTCGTCGCGATCCGCTCGCTTTCCGAAGAGGGTGGACCGGCG
ATGCCCGAAGACCAGGTCCGGGCCTATGCAGAGAACTTCGAAGTCTACGATGAAGAAATCGAAGACTTCCGTCCGGCAAA
ACCATCGGACCACTTTCCAGAATCCGGTTTGGAAAATGCACCGGACCTCAGCCTGATGGCAAAGGCGCGTGCAGGGTTCC
ACGGGCCTTACGGTTTGGGGATCAACCAGTTCTTCAAAGGTATCGGCGGACCTGAGTATATCGCGTCTCTCATGACCGGT
TACACAGGTGAAGAGAAGGAAGAGGCAGGGATCATCCTGTATGAGAACACGGCTTTCCCCGGCGGCTGGATATCGATGGC
ACCGCCATTGGATGATGAACTGGTTGAGTATGCGGACGGTCACCCCAATGACTTGCACAACCTGTCGGCAGACGTATCCG
CGTTCCTGATGTGGACCGCTGAACCCAAGATGATGGCGCGCAAGCAAGCCGGATTTGTCGGCGTATTGTTCCTGACGATC
CTGTCGGTGCTCTTGTATCTGACAAACAAGCGCATCTGGGCGCCTGTCAAAGGCAATAAGTCAGCCTGA

Upstream 100 bases:

>100_bases
GACCAGAAACCATCGAAGCCGACGTCGCCGCTCAAAAAGCTGCTGCAAACGGCGGATCGCAACCGCTGGCCACACCGGCC
GAGTAAAGGAACAAGGTACA

Downstream 100 bases:

>100_bases
TACCCCGTCACTATACTGCTAAAAAGAAACAACCCCCCGAGCACGAGCAGCTTGGGGGGTTGTCCGTCTGCACCTCTTAT
AAAGGCTAATAACAGACCCT

Product: cytochrome c1

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFRRLILSAVATFGFATASMAAGAYDTHIEDFDFSFEGPFGTYDQNQLQRGLQVYTEVCAACHGLKFVAIRSLSEEGGPA
MPEDQVRAYAENFEVYDEEIEDFRPAKPSDHFPESGLENAPDLSLMAKARAGFHGPYGLGINQFFKGIGGPEYIASLMTG
YTGEEKEEAGIILYENTAFPGGWISMAPPLDDELVEYADGHPNDLHNLSADVSAFLMWTAEPKMMARKQAGFVGVLFLTI
LSVLLYLTNKRIWAPVKGNKSA

Sequences:

>Translated_262_residues
MFRRLILSAVATFGFATASMAAGAYDTHIEDFDFSFEGPFGTYDQNQLQRGLQVYTEVCAACHGLKFVAIRSLSEEGGPA
MPEDQVRAYAENFEVYDEEIEDFRPAKPSDHFPESGLENAPDLSLMAKARAGFHGPYGLGINQFFKGIGGPEYIASLMTG
YTGEEKEEAGIILYENTAFPGGWISMAPPLDDELVEYADGHPNDLHNLSADVSAFLMWTAEPKMMARKQAGFVGVLFLTI
LSVLLYLTNKRIWAPVKGNKSA
>Mature_262_residues
MFRRLILSAVATFGFATASMAAGAYDTHIEDFDFSFEGPFGTYDQNQLQRGLQVYTEVCAACHGLKFVAIRSLSEEGGPA
MPEDQVRAYAENFEVYDEEIEDFRPAKPSDHFPESGLENAPDLSLMAKARAGFHGPYGLGINQFFKGIGGPEYIASLMTG
YTGEEKEEAGIILYENTAFPGGWISMAPPLDDELVEYADGHPNDLHNLSADVSAFLMWTAEPKMMARKQAGFVGVLFLTI
LSVLLYLTNKRIWAPVKGNKSA

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. c1 functions as an electron donor to cytochrome c [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21359867, Length=264, Percent_Identity=32.1969696969697, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17506225, Length=257, Percent_Identity=31.1284046692607, Blast_Score=107, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6324639, Length=290, Percent_Identity=36.2068965517241, Blast_Score=143, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24658292, Length=261, Percent_Identity=33.7164750957854, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21358225, Length=263, Percent_Identity=31.9391634980989, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056 [H]

Pfam domain/function: PF02167 Cytochrom_C1 [H]

EC number: 1.10.2.2

Molecular weight: Translated: 28791; Mature: 28791

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRRLILSAVATFGFATASMAAGAYDTHIEDFDFSFEGPFGTYDQNQLQRGLQVYTEVCA
CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ACHGLKFVAIRSLSEEGGPAMPEDQVRAYAENFEVYDEEIEDFRPAKPSDHFPESGLENA
HHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDLSLMAKARAGFHGPYGLGINQFFKGIGGPEYIASLMTGYTGEEKEEAGIILYENTAFP
CCHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
GGWISMAPPLDDELVEYADGHPNDLHNLSADVSAFLMWTAEPKMMARKQAGFVGVLFLTI
CCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHCCHHHHHHHHH
LSVLLYLTNKRIWAPVKGNKSA
HHHHHHHHCCCEEEECCCCCCC
>Mature Secondary Structure
MFRRLILSAVATFGFATASMAAGAYDTHIEDFDFSFEGPFGTYDQNQLQRGLQVYTEVCA
CHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ACHGLKFVAIRSLSEEGGPAMPEDQVRAYAENFEVYDEEIEDFRPAKPSDHFPESGLENA
HHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDLSLMAKARAGFHGPYGLGINQFFKGIGGPEYIASLMTGYTGEEKEEAGIILYENTAFP
CCHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
GGWISMAPPLDDELVEYADGHPNDLHNLSADVSAFLMWTAEPKMMARKQAGFVGVLFLTI
CCCEECCCCCCHHHHHHCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHCCHHHHHHHHH
LSVLLYLTNKRIWAPVKGNKSA
HHHHHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2820981 [H]