| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is cyaA [H]
Identifier: 110677887
GI number: 110677887
Start: 486633
End: 488504
Strand: Direct
Name: cyaA [H]
Synonym: RD1_0501
Alternate gene names: 110677887
Gene position: 486633-488504 (Clockwise)
Preceding gene: 110677886
Following gene: 110677892
Centisome position: 11.77
GC content: 61.54
Gene sequence:
>1872_bases GTGGCCCAGCGACCGCGCGGCATCCTTGCTCTCCCGATTTGGCAGATGATATCGGGCCGGGCGCGCCGATGGGCCTTGCC CCTTGGTGCTGTGACGTTAGCGCTGTTCTGGGTGTTGACCCTGATCATCCCCTACATGTCGGGCCGCGCGGGTTTTTTCG ACCCGCTCGAATACCGTCTTTTGGATGTGCGGCACGTCCTGATTGGACCACGCGCGGCCGCGTCAGACATCGTGATTGTC GCCATAGATGATGAAACGCTCGCAGCAGCACCGGCGGAACTGCAAAGCCGACGGCAGCTTTTGGCGCGGATCATCTCCAA TATCGCGCAAAGCGATGCACGTGTTTTGGCTTTGGATGTACTGCTTGCTGATCCGGGGCCAGCCGAAGATGATGCAGCGC TCGCGGCGGCGCTGGGTGAAATCCCGTCATCCATCGCGGCGGCGGCACGTTTCGGAGCGGACAGTGCATCAGCCGACAGC ATCATCTGGCCGCAAGCTGCGTTCGGCGAGGTGGCCGAGGCGGGTCTGGTCAACCTGTCCACGGACGCCAGCGGCACACC GCGATACGCGCCCCTGCTGATTGATGCAGGAGGCAGCCTCGTCCCCTCCCTTCCCCTGCTCGCATCGCTTTCCTTTGGCG GCGAAAAGGCGGTTTTCGGTGAAACGCAGCTGACATTGGGTACACGGGATGTCCCCCTCGATTTCGGCTTTAACATGCCG CTGCGCCATATCGGGCCAGAAGGGTCCGTGCCCACCTACAGCGCGCGCGATCTGATAAGTGGCACCTTGCCGGACGCCTT GTCCGACAAGCTGGTGGTGCTGGGGTTTTCGGCCTCTGCCATGGGCGACAGGTTTGCGACACCCTTTGACGAGAACACGC CGGGCATGGAGGTGATCGCGACCGCGATTTCGCAACTCAGCGGAGGCGAAACGCTGAGGCGCGATGCGCAGACGCGTCAG TGGGACGCCGCGTTGGCGGTTGCGCTGACACTCATCTGTGTCACCAGTGTGCTTGTCTGGCCCTTGTCGCGCGGGGTCCC GGTTGCTGCCGGGTTTGTGTTGGTGTTCCTTGCGTCCATCACGCTGGCGTTTGCATCGGGCCTCTGGCTCAGCGGGGCGC TGGCGCTTGCTGTCGCATTGCCGCCCGCCATCGCTGCGTCCGGCCTGCGCTATATGCAGGAAAACCTGCAGGCCCGGAAA TCTGAACAGTCTGTCGCCTCATTGCGACAGTTCCAATCACCCGCCCTTGCCGCCAAAATTGAAAGTGATCCCAATTATTT GATGGAACCCATCGAACAGGACCTTGTGGTGCTGTTTGTTGATCTGACCGGCTTTACAGGGCATTCGCAGCGCCTTGGGC AGGATGGCACCCGCAACCTGCTGGCGATGTTTCACAAACTGACGGCCCAAACGGTTGAGGCGCGTGGCGGCAGTGTGTTC AATTATATGGGTGATGGGGCTTTGGCGGTGTTCGGACTGGAACGGGGCGGGGACGCATCGCACGCCGATGATGCATTGGC CAGTGCCTTTGATCTGGTACATTCGTTGTCGCATCAGTCGCTGCCGCAAACGCCTGACGAGCCGCTGTCCTGCCGCATCG GGTTGCACAGCGGGCCCGTGACCCTGTCGCGTCTGGGCGCGCAAAGCCATCAGCAGGTGACCGTGACAGGGGATAATGTG AACCTTGCCAGCCGTTTGATGGAAGTGGCCAAAACGGAAAAGGCCGTTGTGGTTGCGAGCAGCGATTTTGCCGCCGGGTT GACCGATGGCGGTCCGCAGGAGTCAGCCTATACCACTGATGTTGCCATTCGCGGACGCGATGGACGTGTGCAAGTGCTGG TCTGGGCGAAGGACGCGTTGGAAAGATCCTAG
Upstream 100 bases:
>100_bases GCAGCGTGTCGGTCAGCAAGGTGTCTGATGCGTCGACCGTGACGCTTGGCCCGGGCGAAGGTGTTGATGTCGGGGATGCG GTTGAATTTGCCGTTACCGC
Downstream 100 bases:
>100_bases CAGAGGCTGCGGAACCGCTGCGCAATCACATCCAGCACTTCATTCGGGTCCCGTTTCCACCAGTCCTCGGCGCTGAACAC CTCGACCTCGCAATATCCTT
Product: putative cyclase
Products: NA
Alternate protein names: ATP pyrophosphate-lyase 1; Adenylyl cyclase 1; AC 1 [H]
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MAQRPRGILALPIWQMISGRARRWALPLGAVTLALFWVLTLIIPYMSGRAGFFDPLEYRLLDVRHVLIGPRAAASDIVIV AIDDETLAAAPAELQSRRQLLARIISNIAQSDARVLALDVLLADPGPAEDDAALAAALGEIPSSIAAAARFGADSASADS IIWPQAAFGEVAEAGLVNLSTDASGTPRYAPLLIDAGGSLVPSLPLLASLSFGGEKAVFGETQLTLGTRDVPLDFGFNMP LRHIGPEGSVPTYSARDLISGTLPDALSDKLVVLGFSASAMGDRFATPFDENTPGMEVIATAISQLSGGETLRRDAQTRQ WDAALAVALTLICVTSVLVWPLSRGVPVAAGFVLVFLASITLAFASGLWLSGALALAVALPPAIAASGLRYMQENLQARK SEQSVASLRQFQSPALAAKIESDPNYLMEPIEQDLVVLFVDLTGFTGHSQRLGQDGTRNLLAMFHKLTAQTVEARGGSVF NYMGDGALAVFGLERGGDASHADDALASAFDLVHSLSHQSLPQTPDEPLSCRIGLHSGPVTLSRLGAQSHQQVTVTGDNV NLASRLMEVAKTEKAVVVASSDFAAGLTDGGPQESAYTTDVAIRGRDGRVQVLVWAKDALERS
Sequences:
>Translated_623_residues MAQRPRGILALPIWQMISGRARRWALPLGAVTLALFWVLTLIIPYMSGRAGFFDPLEYRLLDVRHVLIGPRAAASDIVIV AIDDETLAAAPAELQSRRQLLARIISNIAQSDARVLALDVLLADPGPAEDDAALAAALGEIPSSIAAAARFGADSASADS IIWPQAAFGEVAEAGLVNLSTDASGTPRYAPLLIDAGGSLVPSLPLLASLSFGGEKAVFGETQLTLGTRDVPLDFGFNMP LRHIGPEGSVPTYSARDLISGTLPDALSDKLVVLGFSASAMGDRFATPFDENTPGMEVIATAISQLSGGETLRRDAQTRQ WDAALAVALTLICVTSVLVWPLSRGVPVAAGFVLVFLASITLAFASGLWLSGALALAVALPPAIAASGLRYMQENLQARK SEQSVASLRQFQSPALAAKIESDPNYLMEPIEQDLVVLFVDLTGFTGHSQRLGQDGTRNLLAMFHKLTAQTVEARGGSVF NYMGDGALAVFGLERGGDASHADDALASAFDLVHSLSHQSLPQTPDEPLSCRIGLHSGPVTLSRLGAQSHQQVTVTGDNV NLASRLMEVAKTEKAVVVASSDFAAGLTDGGPQESAYTTDVAIRGRDGRVQVLVWAKDALERS >Mature_622_residues AQRPRGILALPIWQMISGRARRWALPLGAVTLALFWVLTLIIPYMSGRAGFFDPLEYRLLDVRHVLIGPRAAASDIVIVA IDDETLAAAPAELQSRRQLLARIISNIAQSDARVLALDVLLADPGPAEDDAALAAALGEIPSSIAAAARFGADSASADSI IWPQAAFGEVAEAGLVNLSTDASGTPRYAPLLIDAGGSLVPSLPLLASLSFGGEKAVFGETQLTLGTRDVPLDFGFNMPL RHIGPEGSVPTYSARDLISGTLPDALSDKLVVLGFSASAMGDRFATPFDENTPGMEVIATAISQLSGGETLRRDAQTRQW DAALAVALTLICVTSVLVWPLSRGVPVAAGFVLVFLASITLAFASGLWLSGALALAVALPPAIAASGLRYMQENLQARKS EQSVASLRQFQSPALAAKIESDPNYLMEPIEQDLVVLFVDLTGFTGHSQRLGQDGTRNLLAMFHKLTAQTVEARGGSVFN YMGDGALAVFGLERGGDASHADDALASAFDLVHSLSHQSLPQTPDEPLSCRIGLHSGPVTLSRLGAQSHQQVTVTGDNVN LASRLMEVAKTEKAVVVASSDFAAGLTDGGPQESAYTTDVAIRGRDGRVQVLVWAKDALERS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate cyclase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 [H]
Pfam domain/function: PF00211 Guanylate_cyc [H]
EC number: =4.6.1.1 [H]
Molecular weight: Translated: 65553; Mature: 65422
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS50125 GUANYLATE_CYCLASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQRPRGILALPIWQMISGRARRWALPLGAVTLALFWVLTLIIPYMSGRAGFFDPLEYRL CCCCCCCEEEECHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LDVRHVLIGPRAAASDIVIVAIDDETLAAAPAELQSRRQLLARIISNIAQSDARVLALDV HHHHHHHCCCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE LLADPGPAEDDAALAAALGEIPSSIAAAARFGADSASADSIIWPQAAFGEVAEAGLVNLS EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHCCEEEEC TDASGTPRYAPLLIDAGGSLVPSLPLLASLSFGGEKAVFGETQLTLGTRDVPLDFGFNMP CCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCEEEECCCCCCCCCCCCCC LRHIGPEGSVPTYSARDLISGTLPDALSDKLVVLGFSASAMGDRFATPFDENTPGMEVIA HHHCCCCCCCCCCCHHHHHCCCCCHHHCCCEEEEEECHHHCCCCCCCCCCCCCCHHHHHH TAISQLSGGETLRRDAQTRQWDAALAVALTLICVTSVLVWPLSRGVPVAAGFVLVFLASI HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH TLAFASGLWLSGALALAVALPPAIAASGLRYMQENLQARKSEQSVASLRQFQSPALAAKI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE ESDPNYLMEPIEQDLVVLFVDLTGFTGHSQRLGQDGTRNLLAMFHKLTAQTVEARGGSVF CCCCHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE NYMGDGALAVFGLERGGDASHADDALASAFDLVHSLSHQSLPQTPDEPLSCRIGLHSGPV EECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC TLSRLGAQSHQQVTVTGDNVNLASRLMEVAKTEKAVVVASSDFAAGLTDGGPQESAYTTD HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE VAIRGRDGRVQVLVWAKDALERS EEEECCCCCEEEEEEECHHHCCC >Mature Secondary Structure AQRPRGILALPIWQMISGRARRWALPLGAVTLALFWVLTLIIPYMSGRAGFFDPLEYRL CCCCCCEEEECHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH LDVRHVLIGPRAAASDIVIVAIDDETLAAAPAELQSRRQLLARIISNIAQSDARVLALDV HHHHHHHCCCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEE LLADPGPAEDDAALAAALGEIPSSIAAAARFGADSASADSIIWPQAAFGEVAEAGLVNLS EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHCCEEEEC TDASGTPRYAPLLIDAGGSLVPSLPLLASLSFGGEKAVFGETQLTLGTRDVPLDFGFNMP CCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCEEEECCCEEEECCCCCCCCCCCCCC LRHIGPEGSVPTYSARDLISGTLPDALSDKLVVLGFSASAMGDRFATPFDENTPGMEVIA HHHCCCCCCCCCCCHHHHHCCCCCHHHCCCEEEEEECHHHCCCCCCCCCCCCCCHHHHHH TAISQLSGGETLRRDAQTRQWDAALAVALTLICVTSVLVWPLSRGVPVAAGFVLVFLASI HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH TLAFASGLWLSGALALAVALPPAIAASGLRYMQENLQARKSEQSVASLRQFQSPALAAKI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE ESDPNYLMEPIEQDLVVLFVDLTGFTGHSQRLGQDGTRNLLAMFHKLTAQTVEARGGSVF CCCCHHHHHHHCCCEEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE NYMGDGALAVFGLERGGDASHADDALASAFDLVHSLSHQSLPQTPDEPLSCRIGLHSGPV EECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC TLSRLGAQSHQQVTVTGDNVNLASRLMEVAKTEKAVVVASSDFAAGLTDGGPQESAYTTD HHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE VAIRGRDGRVQVLVWAKDALERS EEEECCCCCEEEEEEECHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9523018; 8418825 [H]