Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110677763

Identifier: 110677763

GI number: 110677763

Start: 358424

End: 359344

Strand: Direct

Name: 110677763

Synonym: RD1_0364

Alternate gene names: NA

Gene position: 358424-359344 (Clockwise)

Preceding gene: 110677762

Following gene: 110677764

Centisome position: 8.67

GC content: 61.89

Gene sequence:

>921_bases
ATGCGCCGACGTTTTACAATCGCAATAATCAGCGCCGTGGCCCTCGCGCCGTGGTTCTGGTTCAAGCCTGTCGCGCCGCC
GGATCAACCCGCTCACCTGTTGGCAGTAACCGACATCCCCCGCGACGAGGACTGGATCGGCGGCCTGTCCGGCATTGATC
TGACACCTGATGGCACGGAATTTGTCTTTGTCACGGACCGGGGGCATGTGGCGCGCGGTCAGCTCCTGCGCAGGGACGGG
CAACTGACGGGAATCGAGATCGACACGAAACGCGTGTTGGTCGACCCGCGCGGCCGTGTCTGGGAAACACTGCAAACGGA
CGCGGAAGGGGTCGCATGGGCCGCGTCTGGTGCGATTTTCGTGTCCTTTGAGCACGCCCACCGCGTGCACGCCTACCCGA
CGCTGGACACGCCGGAGAAACTCCCAAGCTACACCCGTGCATGGGGCGCATTCAAACAAAACGGCGGGCTTGAAGCGCTC
GCCATTCAGGACGGCGGATCGCTGTTCGCGATCCCCGAGCATGTCCATCCCGGCGCTTGGGCCGCACTGGTCTATCGCCG
CAAACCGGGGGAGGCGTGGCAACAGGCCTTTACCCTTCCGGTCACCGACGAATTCTCCCCGGTTGGGGCCGATTTTGGCC
CCGATGGACGGCTCTATGTGCTTGAGCGCGGCCTGTATCCCTTCGGCTTTTACAGCCGCGTGCGGGCGATGAGAGTGCAG
GAAGACAGTGTGACGGATATCGAAACTGTTCTGCAAACCAAACTGGGGACGCATGGCAACCTCGAAGGCCTCGCAGTCTG
GCGCGACGCTGCCGGGACGATCAGGCTGACCATGGTGTCTGACGATAATTTCTATCCCTTCATGCGCGGTGAAATTGTCG
AATACGCTCTGACGCAAAGGGTTGCCACGCAGCCGCAATAG

Upstream 100 bases:

>100_bases
AGGCGTGGGTCAATAATATCCTGAACCCGCCCCCACCTGATCCCAATGCGAAACCTCGAAAGCCAAGGCCGCCCGTGCGC
CTTGCTGATCTGCCTGCACA

Downstream 100 bases:

>100_bases
GCCTAAAGACGCGGCGTCGGCGATGGTTGCCGACCAAGTGCCGCACCCTTGCCAAAACGGATTATTCACATGACACGCGC
TCACCTCCCCGGCATCATTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRRRFTIAIISAVALAPWFWFKPVAPPDQPAHLLAVTDIPRDEDWIGGLSGIDLTPDGTEFVFVTDRGHVARGQLLRRDG
QLTGIEIDTKRVLVDPRGRVWETLQTDAEGVAWAASGAIFVSFEHAHRVHAYPTLDTPEKLPSYTRAWGAFKQNGGLEAL
AIQDGGSLFAIPEHVHPGAWAALVYRRKPGEAWQQAFTLPVTDEFSPVGADFGPDGRLYVLERGLYPFGFYSRVRAMRVQ
EDSVTDIETVLQTKLGTHGNLEGLAVWRDAAGTIRLTMVSDDNFYPFMRGEIVEYALTQRVATQPQ

Sequences:

>Translated_306_residues
MRRRFTIAIISAVALAPWFWFKPVAPPDQPAHLLAVTDIPRDEDWIGGLSGIDLTPDGTEFVFVTDRGHVARGQLLRRDG
QLTGIEIDTKRVLVDPRGRVWETLQTDAEGVAWAASGAIFVSFEHAHRVHAYPTLDTPEKLPSYTRAWGAFKQNGGLEAL
AIQDGGSLFAIPEHVHPGAWAALVYRRKPGEAWQQAFTLPVTDEFSPVGADFGPDGRLYVLERGLYPFGFYSRVRAMRVQ
EDSVTDIETVLQTKLGTHGNLEGLAVWRDAAGTIRLTMVSDDNFYPFMRGEIVEYALTQRVATQPQ
>Mature_306_residues
MRRRFTIAIISAVALAPWFWFKPVAPPDQPAHLLAVTDIPRDEDWIGGLSGIDLTPDGTEFVFVTDRGHVARGQLLRRDG
QLTGIEIDTKRVLVDPRGRVWETLQTDAEGVAWAASGAIFVSFEHAHRVHAYPTLDTPEKLPSYTRAWGAFKQNGGLEAL
AIQDGGSLFAIPEHVHPGAWAALVYRRKPGEAWQQAFTLPVTDEFSPVGADFGPDGRLYVLERGLYPFGFYSRVRAMRVQ
EDSVTDIETVLQTKLGTHGNLEGLAVWRDAAGTIRLTMVSDDNFYPFMRGEIVEYALTQRVATQPQ

Specific function: Unknown

COG id: COG4246

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34028; Mature: 34028

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRFTIAIISAVALAPWFWFKPVAPPDQPAHLLAVTDIPRDEDWIGGLSGIDLTPDGTE
CCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCE
FVFVTDRGHVARGQLLRRDGQLTGIEIDTKRVLVDPRGRVWETLQTDAEGVAWAASGAIF
EEEEECCCCCHHHHHHHCCCCEEEEEEECEEEEECCCCCHHHHHHCCCCCEEEEECCEEE
VSFEHAHRVHAYPTLDTPEKLPSYTRAWGAFKQNGGLEALAIQDGGSLFAIPEHVHPGAW
EEEECCCEEEECCCCCCHHHCCHHHHHHHCHHCCCCEEEEEEECCCCEEEECCCCCCCCE
AALVYRRKPGEAWQQAFTLPVTDEFSPVGADFGPDGRLYVLERGLYPFGFYSRVRAMRVQ
EEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHEEEC
EDSVTDIETVLQTKLGTHGNLEGLAVWRDAAGTIRLTMVSDDNFYPFMRGEIVEYALTQR
CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
VATQPQ
HHCCCC
>Mature Secondary Structure
MRRRFTIAIISAVALAPWFWFKPVAPPDQPAHLLAVTDIPRDEDWIGGLSGIDLTPDGTE
CCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCE
FVFVTDRGHVARGQLLRRDGQLTGIEIDTKRVLVDPRGRVWETLQTDAEGVAWAASGAIF
EEEEECCCCCHHHHHHHCCCCEEEEEEECEEEEECCCCCHHHHHHCCCCCEEEEECCEEE
VSFEHAHRVHAYPTLDTPEKLPSYTRAWGAFKQNGGLEALAIQDGGSLFAIPEHVHPGAW
EEEECCCEEEECCCCCCHHHCCHHHHHHHCHHCCCCEEEEEEECCCCEEEECCCCCCCCE
AALVYRRKPGEAWQQAFTLPVTDEFSPVGADFGPDGRLYVLERGLYPFGFYSRVRAMRVQ
EEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHEEEC
EDSVTDIETVLQTKLGTHGNLEGLAVWRDAAGTIRLTMVSDDNFYPFMRGEIVEYALTQR
CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHH
VATQPQ
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA