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The map label for this gene is ocd1 [H]

Identifier: 110677726

GI number: 110677726

Start: 310369

End: 311292

Strand: Direct

Name: ocd1 [H]

Synonym: RD1_0323

Alternate gene names: 110677726

Gene position: 310369-311292 (Clockwise)

Preceding gene: 110677725

Following gene: 110677727

Centisome position: 7.51

GC content: 60.82

Gene sequence:

>924_bases
ATGAGCCCCATTCCCATCATACCCTTTTCTGAAGGCGAGGCAGTGCTGGACTGGATCGGTCTAACGGATGCCTTGGCCGC
AGGCCACCTTTTGCCCAAGGCTGAAATTGCCGACACGTTTTTGTACCGCGATCCGGATACGCTGCTGAACCGCGCGGCGT
GGATCGACGGTCTGGGCCTTGCGGTAAAATCCGCCACGATCTTTCCGGGCAACACGGCGCAGGGGCTGTCGAGCGTCAAT
GGCGGCGTCACGCTCTATTGTGACAGGACCGGCACGCTGGAGGCGATTGTCGATTTCCACCTCGTGACCAAATGGAAAAC
CGCCGGAGACAGCCTGTTGGCGGCGCGCCGTCTGGCACGGGCCGACAGCCGCACCATTCTGATCGTGGGCGCAGGCACAC
AGGCGCGTGCACTGCACAGCGCCTATTCGGCGCTGTTCCCGCACGCGCAGTTTACCGTCTGGAACCGCACAGCGCAGAAT
GCAGAGCAGCTTGCCCGCGAGATCCCCGGCATTGCCATCGCTGAGGATCTGGAAACAGCCGTCAGGGCCGCAGATATCGT
CACGGCGGCGACCATGACGACCACGCCGCTGATCCATGGCGCATGGCTACAACCGGGTCAGCACATTGATCTGATCGGGG
CCTATCGTCCCGATATGCGCGAGGTTGACGATGACGCCCTGCAGCGGACCCGCGTTTTTGTCGACAGCCTTGATACGACC
GTCGATCACATTGGCGAGTTGAAAATTCCGATTGCGGCAGGCGCGTTCAGCGCCGATCAGATCGTAGCGGATTATTATGC
GCCGGAATCGTTCAAACGCCAAGGCGACGATGAAATCACCCTGTTCAAGAATGGCGGTGGCGCGCATCTGGACCTCATGA
CCAGCCGCTTTATTCTGGAGCGCTGGCAGGCGCAGTCCGCATGA

Upstream 100 bases:

>100_bases
CCGCACAGGGTTTTGGCTGGCAAACCCATCTGTTTGAAGGGCCGCAAGGCTGGGCCGACCGGCTGGTGGCATCCGGGCTC
CTGACCCGCGCAGAAGCCGC

Downstream 100 bases:

>100_bases
TCTGGGCGCTGCTGCTACTGGCGGGCATTGCGGCAGCACCCTTTGTGATCGAGGCCCTGCGCCGCCCCATGAACGCCGCC
GCGCGCAAATCGGCCCCCGG

Product: ornithine cyclodeaminase, putative

Products: NA

Alternate protein names: OCD 1 [H]

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSPIPIIPFSEGEAVLDWIGLTDALAAGHLLPKAEIADTFLYRDPDTLLNRAAWIDGLGLAVKSATIFPGNTAQGLSSVN
GGVTLYCDRTGTLEAIVDFHLVTKWKTAGDSLLAARRLARADSRTILIVGAGTQARALHSAYSALFPHAQFTVWNRTAQN
AEQLAREIPGIAIAEDLETAVRAADIVTAATMTTTPLIHGAWLQPGQHIDLIGAYRPDMREVDDDALQRTRVFVDSLDTT
VDHIGELKIPIAAGAFSADQIVADYYAPESFKRQGDDEITLFKNGGGAHLDLMTSRFILERWQAQSA

Sequences:

>Translated_307_residues
MSPIPIIPFSEGEAVLDWIGLTDALAAGHLLPKAEIADTFLYRDPDTLLNRAAWIDGLGLAVKSATIFPGNTAQGLSSVN
GGVTLYCDRTGTLEAIVDFHLVTKWKTAGDSLLAARRLARADSRTILIVGAGTQARALHSAYSALFPHAQFTVWNRTAQN
AEQLAREIPGIAIAEDLETAVRAADIVTAATMTTTPLIHGAWLQPGQHIDLIGAYRPDMREVDDDALQRTRVFVDSLDTT
VDHIGELKIPIAAGAFSADQIVADYYAPESFKRQGDDEITLFKNGGGAHLDLMTSRFILERWQAQSA
>Mature_306_residues
SPIPIIPFSEGEAVLDWIGLTDALAAGHLLPKAEIADTFLYRDPDTLLNRAAWIDGLGLAVKSATIFPGNTAQGLSSVNG
GVTLYCDRTGTLEAIVDFHLVTKWKTAGDSLLAARRLARADSRTILIVGAGTQARALHSAYSALFPHAQFTVWNRTAQNA
EQLAREIPGIAIAEDLETAVRAADIVTAATMTTTPLIHGAWLQPGQHIDLIGAYRPDMREVDDDALQRTRVFVDSLDTTV
DHIGELKIPIAAGAFSADQIVADYYAPESFKRQGDDEITLFKNGGGAHLDLMTSRFILERWQAQSA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=237, Percent_Identity=29.957805907173, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI62241008, Length=237, Percent_Identity=29.957805907173, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24642678, Length=261, Percent_Identity=29.1187739463602, Blast_Score=83, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014334
- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33176; Mature: 33045

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPIPIIPFSEGEAVLDWIGLTDALAAGHLLPKAEIADTFLYRDPDTLLNRAAWIDGLGL
CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
AVKSATIFPGNTAQGLSSVNGGVTLYCDRTGTLEAIVDFHLVTKWKTAGDSLLAARRLAR
EEEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHH
ADSRTILIVGAGTQARALHSAYSALFPHAQFTVWNRTAQNAEQLAREIPGIAIAEDLETA
CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHH
VRAADIVTAATMTTTPLIHGAWLQPGQHIDLIGAYRPDMREVDDDALQRTRVFVDSLDTT
HHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHH
VDHIGELKIPIAAGAFSADQIVADYYAPESFKRQGDDEITLFKNGGGAHLDLMTSRFILE
HHHHCCEEEEEEECCCCHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHH
RWQAQSA
HHHHCCC
>Mature Secondary Structure 
SPIPIIPFSEGEAVLDWIGLTDALAAGHLLPKAEIADTFLYRDPDTLLNRAAWIDGLGL
CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
AVKSATIFPGNTAQGLSSVNGGVTLYCDRTGTLEAIVDFHLVTKWKTAGDSLLAARRLAR
EEEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHH
ADSRTILIVGAGTQARALHSAYSALFPHAQFTVWNRTAQNAEQLAREIPGIAIAEDLETA
CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHH
VRAADIVTAATMTTTPLIHGAWLQPGQHIDLIGAYRPDMREVDDDALQRTRVFVDSLDTT
HHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHH
VDHIGELKIPIAAGAFSADQIVADYYAPESFKRQGDDEITLFKNGGGAHLDLMTSRFILE
HHHHCCEEEEEEECCCCHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHH
RWQAQSA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]