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The map label for this gene is yngJ [H]

Identifier: 110677656

GI number: 110677656

Start: 250459

End: 251688

Strand: Direct

Name: yngJ [H]

Synonym: RD1_0250

Alternate gene names: 110677656

Gene position: 250459-251688 (Clockwise)

Preceding gene: 110677655

Following gene: 110677658

Centisome position: 6.06

GC content: 58.54

Gene sequence:

>1230_bases
ATGCTAGAAAGAAGGACCGAACATATGTCAGACAAGCTGGAGTCCATCCTCGCCGCTGCCCATGATCACGCCACGCAGGT
CGTTACCCCGAATGTCGATGCATGGAACGCCGCAAAGGCATGGCCGCGCGATGCATCCGACAAGGCCGGTGCGGCTGGGC
TGATGGGGCTTTATGCGCCCGAGGCATGGGGCGGCGAAGGGCTGCCGCTGTCCGAAGGGATACAGGTCTATGAACAACTC
GGCCTCGGCGATGGCGCTTATGCCTTTGCCCTGTCGATGCACAACATCTGCACCTTTGCGGGCTGCGGGTATGGCACCGA
TGCCTTCAAGGAAAAATGGGCGCATGACCTCACGTCAGGCCGCAAGTTGGCGAATTTTGCTCTTACGGAACCGCAATCCG
GGTCCGACCCGGTGAAGATGTACACCCGTGCGACCATAAATGACGATGGGACATGGACGATCAGCGGGTCGAAAGCATGG
GTGAGCCTTGCGGCCGAAGCGGACATCTATTTCACCGTCGTCAAGACCAGCGATGCACCGGGTCACAAAGATATGGCAAT
GATCGCGATTCCCGCAGATGCTCCGGGGATCAGCTTTGGGAAGCCTTATGAAACGCCGTCCTACAACTACCTGCCGATGT
CCGAGATGTATCTCGACAAGGTAGTGGTCAGCGCTGACAATATCATCTTGCCGATTGGACAGGGGTTGCAGGGCTCCTTG
ATGGCCATCGACATCGCGCGCGTGTCCATCGCATCAGGCTGCTGTGGCTTGATGCAGGCGGCGCTTGACACGGCACTGGC
CTATTCGAAGAACCGCAAGATGTTTGGGGGCAAAAACCTTGACCTGGATGGAATCCAGTGGATGCTGGGCGAGGTTGCGA
CCGATCTTGAGGTCTCAAGGCTGCTTTATCGCAAAGCCGCACAGGCGCTGGGTACACCGGAAGGGCCGTTGATGGCCGCA
CATGCAAAACGTTTTGTGCCGGATGCAGCCGTTAAGGCCACGAATACCTGCACGCAGGTCCTTGGGGGCATGGGATTGTT
GCAACCCTATGGCTTGGACCGCCTCTCACGTCTGGCGCAGATGCTGCGGATCGTGGACGGTACAACGGAAATCAGCCGTG
TGGTCATAGGGCGGGCTTTGCAAAAGCGGGCGGCTGGCTTGCCGGATTTACCAGTGCCCAAGGGGTTTGGCGAGGAAGCA
GCAGACGCTGTGCCTGTCGCCGCTGAATAA

Upstream 100 bases:

>100_bases
GATGGCTAGTAAACCCAAGTAATAGATGTTTCACACCAACCGGGCTGCGATTGTCACGTCTTGCTTTGCGCTTATTGCGC
GCGGCAAGAAGCGACAATGC

Downstream 100 bases:

>100_bases
ACTGCTTCGCCGCCATGTCGAGGAGCAGGTGATCGCCCCCCTGGCCAGCCGCACCTGAGCGGCTGGTTTTGTTCATCCGG
TATGCAGTGGGGCGTGGTCC

Product: acyl-CoA dehydrogenase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MLERRTEHMSDKLESILAAAHDHATQVVTPNVDAWNAAKAWPRDASDKAGAAGLMGLYAPEAWGGEGLPLSEGIQVYEQL
GLGDGAYAFALSMHNICTFAGCGYGTDAFKEKWAHDLTSGRKLANFALTEPQSGSDPVKMYTRATINDDGTWTISGSKAW
VSLAAEADIYFTVVKTSDAPGHKDMAMIAIPADAPGISFGKPYETPSYNYLPMSEMYLDKVVVSADNIILPIGQGLQGSL
MAIDIARVSIASGCCGLMQAALDTALAYSKNRKMFGGKNLDLDGIQWMLGEVATDLEVSRLLYRKAAQALGTPEGPLMAA
HAKRFVPDAAVKATNTCTQVLGGMGLLQPYGLDRLSRLAQMLRIVDGTTEISRVVIGRALQKRAAGLPDLPVPKGFGEEA
ADAVPVAAE

Sequences:

>Translated_409_residues
MLERRTEHMSDKLESILAAAHDHATQVVTPNVDAWNAAKAWPRDASDKAGAAGLMGLYAPEAWGGEGLPLSEGIQVYEQL
GLGDGAYAFALSMHNICTFAGCGYGTDAFKEKWAHDLTSGRKLANFALTEPQSGSDPVKMYTRATINDDGTWTISGSKAW
VSLAAEADIYFTVVKTSDAPGHKDMAMIAIPADAPGISFGKPYETPSYNYLPMSEMYLDKVVVSADNIILPIGQGLQGSL
MAIDIARVSIASGCCGLMQAALDTALAYSKNRKMFGGKNLDLDGIQWMLGEVATDLEVSRLLYRKAAQALGTPEGPLMAA
HAKRFVPDAAVKATNTCTQVLGGMGLLQPYGLDRLSRLAQMLRIVDGTTEISRVVIGRALQKRAAGLPDLPVPKGFGEEA
ADAVPVAAE
>Mature_409_residues
MLERRTEHMSDKLESILAAAHDHATQVVTPNVDAWNAAKAWPRDASDKAGAAGLMGLYAPEAWGGEGLPLSEGIQVYEQL
GLGDGAYAFALSMHNICTFAGCGYGTDAFKEKWAHDLTSGRKLANFALTEPQSGSDPVKMYTRATINDDGTWTISGSKAW
VSLAAEADIYFTVVKTSDAPGHKDMAMIAIPADAPGISFGKPYETPSYNYLPMSEMYLDKVVVSADNIILPIGQGLQGSL
MAIDIARVSIASGCCGLMQAALDTALAYSKNRKMFGGKNLDLDGIQWMLGEVATDLEVSRLLYRKAAQALGTPEGPLMAA
HAKRFVPDAAVKATNTCTQVLGGMGLLQPYGLDRLSRLAQMLRIVDGTTEISRVVIGRALQKRAAGLPDLPVPKGFGEEA
ADAVPVAAE

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI7656849, Length=374, Percent_Identity=29.4117647058824, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI4557233, Length=366, Percent_Identity=30.0546448087432, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI4557231, Length=375, Percent_Identity=27.2, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI187960098, Length=375, Percent_Identity=27.2, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI4557235, Length=339, Percent_Identity=30.9734513274336, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI76496475, Length=339, Percent_Identity=30.9734513274336, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI4501859, Length=376, Percent_Identity=26.8617021276596, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI21361497, Length=371, Percent_Identity=28.3018867924528, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI226958412, Length=345, Percent_Identity=28.4057971014493, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI226958414, Length=377, Percent_Identity=27.8514588859416, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI48976061, Length=355, Percent_Identity=26.1971830985915, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI211971008, Length=355, Percent_Identity=26.1971830985915, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI38505218, Length=282, Percent_Identity=26.5957446808511, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4503943, Length=364, Percent_Identity=25, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4501857, Length=358, Percent_Identity=23.1843575418994, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI7669494, Length=338, Percent_Identity=25.1479289940828, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87081958, Length=350, Percent_Identity=26, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786223, Length=266, Percent_Identity=24.812030075188, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17533517, Length=371, Percent_Identity=32.0754716981132, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17534899, Length=378, Percent_Identity=30.4232804232804, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=27.6595744680851, Blast_Score=151, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI17508101, Length=375, Percent_Identity=25.8666666666667, Blast_Score=145, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=27.7922077922078, Blast_Score=144, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI17570075, Length=362, Percent_Identity=26.7955801104972, Blast_Score=144, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI71985184, Length=366, Percent_Identity=27.8688524590164, Blast_Score=138, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17506239, Length=331, Percent_Identity=26.8882175226586, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17505929, Length=362, Percent_Identity=28.1767955801105, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17551932, Length=364, Percent_Identity=26.9230769230769, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71990804, Length=280, Percent_Identity=26.4285714285714, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71985192, Length=291, Percent_Identity=27.4914089347079, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17534353, Length=390, Percent_Identity=24.6153846153846, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71982178, Length=277, Percent_Identity=24.187725631769, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32563615, Length=232, Percent_Identity=25.4310344827586, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24646207, Length=376, Percent_Identity=30.0531914893617, Blast_Score=158, Evalue=8e-39,
Organism=Drosophila melanogaster, GI21356377, Length=381, Percent_Identity=28.3464566929134, Blast_Score=152, Evalue=5e-37,
Organism=Drosophila melanogaster, GI24660351, Length=371, Percent_Identity=27.2237196765499, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24666513, Length=333, Percent_Identity=27.6276276276276, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI21355753, Length=339, Percent_Identity=28.3185840707965, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI281363737, Length=380, Percent_Identity=25.2631578947368, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI19920834, Length=390, Percent_Identity=23.8461538461538, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43471; Mature: 43471

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERRTEHMSDKLESILAAAHDHATQVVTPNVDAWNAAKAWPRDASDKAGAAGLMGLYAP
CCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
EAWGGEGLPLSEGIQVYEQLGLGDGAYAFALSMHNICTFAGCGYGTDAFKEKWAHDLTSG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
RKLANFALTEPQSGSDPVKMYTRATINDDGTWTISGSKAWVSLAAEADIYFTVVKTSDAP
CEEHHEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCEEEEEEECCEEEEEEEECCCCC
GHKDMAMIAIPADAPGISFGKPYETPSYNYLPMSEMYLDKVVVSADNIILPIGQGLQGSL
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCE
MAIDIARVSIASGCCGLMQAALDTALAYSKNRKMFGGKNLDLDGIQWMLGEVATDLEVSR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LLYRKAAQALGTPEGPLMAAHAKRFVPDAAVKATNTCTQVLGGMGLLQPYGLDRLSRLAQ
HHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
MLRIVDGTTEISRVVIGRALQKRAAGLPDLPVPKGFGEEAADAVPVAAE
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MLERRTEHMSDKLESILAAAHDHATQVVTPNVDAWNAAKAWPRDASDKAGAAGLMGLYAP
CCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
EAWGGEGLPLSEGIQVYEQLGLGDGAYAFALSMHNICTFAGCGYGTDAFKEKWAHDLTSG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
RKLANFALTEPQSGSDPVKMYTRATINDDGTWTISGSKAWVSLAAEADIYFTVVKTSDAP
CEEHHEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCEEEEEEECCEEEEEEEECCCCC
GHKDMAMIAIPADAPGISFGKPYETPSYNYLPMSEMYLDKVVVSADNIILPIGQGLQGSL
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCE
MAIDIARVSIASGCCGLMQAALDTALAYSKNRKMFGGKNLDLDGIQWMLGEVATDLEVSR
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LLYRKAAQALGTPEGPLMAAHAKRFVPDAAVKATNTCTQVLGGMGLLQPYGLDRLSRLAQ
HHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
MLRIVDGTTEISRVVIGRALQKRAAGLPDLPVPKGFGEEAADAVPVAAE
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]