| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is dadA [H]
Identifier: 110677644
GI number: 110677644
Start: 237454
End: 238695
Strand: Direct
Name: dadA [H]
Synonym: RD1_0238
Alternate gene names: 110677644
Gene position: 237454-238695 (Clockwise)
Preceding gene: 110677641
Following gene: 110677645
Centisome position: 5.75
GC content: 61.59
Gene sequence:
>1242_bases TTGACCAAAAACGTGGTGGTCATAGGAGCGGGCATCGTCGGCGTGTCGACGGCGATCTGGCTGAAACGCGCGGGCGCGCA GGTGACAATCATCGACCGGGCAGGACCGGGTAAAGGCACATCTCACGGCAATGCCGGTGTGCTGGCCGCGGCGGCCATGG TGCCCGTGACCACGCCCGGGTTGATCAGGAAAGCACCGGGCATGCTGTTCAACCCTGATTTCCCGCTGTATCTGCGCTGG TCCTATCTGCCGAAAATCGCGCCGTGGCTGGTGAAATACCTGTCGAACGCAAATGATGCGGACACCCGGCGCATCGCGCG CGATCTGGCGCCGATTGTGACGGACAGCGTGAGCCAGCACAAGTCTCTGGTCCGCGAACTGGGGCTGGATGCGTGGGTCA CTGAAAGCGATTACTGTTTTGCCTATACCGATGAGGCGGCCTTTAAAAGCGAGGCCTATGTTTGGGCGCTGCGGCGGGAT GCGGGTTTTGAGCCCGAACTGATCCGCGGCGGGGACGTGCAGGACTATGAGCCCAACATCAGCCCAAGCGTGGGTCTGAT CGCTGCGTTGAAAGACCACGGCTTCATCCGTGATCCCGGCGGATACGTACAGGCGCTGGCCAAGGCATTCGACGGGATGG GCGGCACAGTCATCACAGCCGAGGTCAAGGATTTCGACCTGAGCGGGGGCCGTATCAGCGGGTTGGAAACCACCGCCGGG CGGATTAACTGCGATGATGCGGTGCTTGCAACCGGCGTCTGGTCAAAACCCCTGATGAAGAAGCTCGGCCTCAACATCCC GCTGGAGTCAGAGCGCGGCTATCACATCGTATATGAAGACGCGACAGGCGGACCCGCGCGCCCCACCATGATCGCATCGG GCAAATTTGTGGCCACGCCCATGGCACAGGGTGTGCGCTGCGCCGGTATCGTCGAACTGGGTGGCCTGCATGCCGGACCT TCCGATGCGCCACTGAAATTCCTGCGCAAAAAGACCAAAGAGACCTTTCCCAACCTGAATGCCACCGCAGAGGTCGAATG GCTGGGGCACCGGCCCGCGCCGACGGACAGTCTGCCACTGATCGGGCAGATCGGCAAAACCGGCGTGTTCACGGCCTTTG GGCATCACCACATCGGCCTGACCGGTGGCCCCAAGACCGGACGGCTTGTGGCGGGGCTTGTGATGGAGCACCCTGCCAAT CAGGATCTCACCGCCTATGCACCACAGAGATTCCAAAACTAA
Upstream 100 bases:
>100_bases CATTTTGTTGACGTGTTGTGAAAGATTGTTCCTAATGGGGCCAAGAATCAGCCCTGAGGTGCGTCTTGTCCTATTCCTGC GTCAGTAGAAAGATGCCGCG
Downstream 100 bases:
>100_bases AAACCAACATGGAGAACACAATGAAAATGAAAAGAAAACTGATGGCAAGCGTCGCGACAGTGGCGCTGACGGTAACCTCT GCTGTCCCGGCTTTTGCGGC
Product: oxidoreductase, FAD-binding, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 413; Mature: 412
Protein sequence:
>413_residues MTKNVVVIGAGIVGVSTAIWLKRAGAQVTIIDRAGPGKGTSHGNAGVLAAAAMVPVTTPGLIRKAPGMLFNPDFPLYLRW SYLPKIAPWLVKYLSNANDADTRRIARDLAPIVTDSVSQHKSLVRELGLDAWVTESDYCFAYTDEAAFKSEAYVWALRRD AGFEPELIRGGDVQDYEPNISPSVGLIAALKDHGFIRDPGGYVQALAKAFDGMGGTVITAEVKDFDLSGGRISGLETTAG RINCDDAVLATGVWSKPLMKKLGLNIPLESERGYHIVYEDATGGPARPTMIASGKFVATPMAQGVRCAGIVELGGLHAGP SDAPLKFLRKKTKETFPNLNATAEVEWLGHRPAPTDSLPLIGQIGKTGVFTAFGHHHIGLTGGPKTGRLVAGLVMEHPAN QDLTAYAPQRFQN
Sequences:
>Translated_413_residues MTKNVVVIGAGIVGVSTAIWLKRAGAQVTIIDRAGPGKGTSHGNAGVLAAAAMVPVTTPGLIRKAPGMLFNPDFPLYLRW SYLPKIAPWLVKYLSNANDADTRRIARDLAPIVTDSVSQHKSLVRELGLDAWVTESDYCFAYTDEAAFKSEAYVWALRRD AGFEPELIRGGDVQDYEPNISPSVGLIAALKDHGFIRDPGGYVQALAKAFDGMGGTVITAEVKDFDLSGGRISGLETTAG RINCDDAVLATGVWSKPLMKKLGLNIPLESERGYHIVYEDATGGPARPTMIASGKFVATPMAQGVRCAGIVELGGLHAGP SDAPLKFLRKKTKETFPNLNATAEVEWLGHRPAPTDSLPLIGQIGKTGVFTAFGHHHIGLTGGPKTGRLVAGLVMEHPAN QDLTAYAPQRFQN >Mature_412_residues TKNVVVIGAGIVGVSTAIWLKRAGAQVTIIDRAGPGKGTSHGNAGVLAAAAMVPVTTPGLIRKAPGMLFNPDFPLYLRWS YLPKIAPWLVKYLSNANDADTRRIARDLAPIVTDSVSQHKSLVRELGLDAWVTESDYCFAYTDEAAFKSEAYVWALRRDA GFEPELIRGGDVQDYEPNISPSVGLIAALKDHGFIRDPGGYVQALAKAFDGMGGTVITAEVKDFDLSGGRISGLETTAGR INCDDAVLATGVWSKPLMKKLGLNIPLESERGYHIVYEDATGGPARPTMIASGKFVATPMAQGVRCAGIVELGGLHAGPS DAPLKFLRKKTKETFPNLNATAEVEWLGHRPAPTDSLPLIGQIGKTGVFTAFGHHHIGLTGGPKTGRLVAGLVMEHPANQ DLTAYAPQRFQN
Specific function: Oxidative deamination of D-amino acids [H]
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Inner Membrane-Bound [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787438, Length=404, Percent_Identity=23.7623762376238, Blast_Score=96, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023080 - InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: =1.4.99.1 [H]
Molecular weight: Translated: 44020; Mature: 43889
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKNVVVIGAGIVGVSTAIWLKRAGAQVTIIDRAGPGKGTSHGNAGVLAAAAMVPVTTPG CCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCH LIRKAPGMLFNPDFPLYLRWSYLPKIAPWLVKYLSNANDADTRRIARDLAPIVTDSVSQH HHHHCCCCEECCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH KSLVRELGLDAWVTESDYCFAYTDEAAFKSEAYVWALRRDAGFEPELIRGGDVQDYEPNI HHHHHHCCCCEEECCCCEEEEEECCHHHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC SPSVGLIAALKDHGFIRDPGGYVQALAKAFDGMGGTVITAEVKDFDLSGGRISGLETTAG CCCCCEEEEHHCCCCEECCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEECCCCCCCC RINCDDAVLATGVWSKPLMKKLGLNIPLESERGYHIVYEDATGGPARPTMIASGKFVATP CCCCCCHHEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCEEECH MAQGVRCAGIVELGGLHAGPSDAPLKFLRKKTKETFPNLNATAEVEWLGHRPAPTDSLPL HHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCH IGQIGKTGVFTAFGHHHIGLTGGPKTGRLVAGLVMEHPANQDLTAYAPQRFQN HHCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCCCCCCCCEECCHHHHCC >Mature Secondary Structure TKNVVVIGAGIVGVSTAIWLKRAGAQVTIIDRAGPGKGTSHGNAGVLAAAAMVPVTTPG CCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCH LIRKAPGMLFNPDFPLYLRWSYLPKIAPWLVKYLSNANDADTRRIARDLAPIVTDSVSQH HHHHCCCCEECCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH KSLVRELGLDAWVTESDYCFAYTDEAAFKSEAYVWALRRDAGFEPELIRGGDVQDYEPNI HHHHHHCCCCEEECCCCEEEEEECCHHHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC SPSVGLIAALKDHGFIRDPGGYVQALAKAFDGMGGTVITAEVKDFDLSGGRISGLETTAG CCCCCEEEEHHCCCCEECCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEECCCCCCCC RINCDDAVLATGVWSKPLMKKLGLNIPLESERGYHIVYEDATGGPARPTMIASGKFVATP CCCCCCHHEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCEEECH MAQGVRCAGIVELGGLHAGPSDAPLKFLRKKTKETFPNLNATAEVEWLGHRPAPTDSLPL HHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCH IGQIGKTGVFTAFGHHHIGLTGGPKTGRLVAGLVMEHPANQDLTAYAPQRFQN HHCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCCCCCCCCEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA