Click here to switch to the map view.

The map label for this gene is 110677635

Identifier: 110677635

GI number: 110677635

Start: 226454

End: 227707

Strand: Direct

Name: 110677635

Synonym: RD1_0227

Alternate gene names: NA

Gene position: 226454-227707 (Clockwise)

Preceding gene: 110677634

Following gene: 110677636

Centisome position: 5.48

GC content: 60.29

Gene sequence:

>1254_bases
TTGGCCTTTATGGTTAACGATATGATGTTTCTGCGGCATGCTGCCCGTTTGCGTTCGGGCTGGTTTCAAAAGACCCGTGA
TCTGCCGGATGCGTATCCGGAAAGTCGCGGGATTTCGAAACGTGCGCTGTCGAAACAAGAAAATCCGCATTTGGGCAGGG
CGAGGCGCAGGTCGCGCGTTCGCATCGCAGTCAGCGCCCGCAGTTTACTTTTAACGGCTGCGATCAGCCTGAATGCTGCC
TGCGCCTGGTCTGAAACCCTGCGCGTTGCCACGTTCAACACGGGGTTGGAGCGGAAAGGGCCCGCCCTTTTGCTGCGTGA
CATCGTCCGGGGAGAGGACGCGCAAATTGAAGCGGTGGCGTCGGTGTTGACCACAATCGCACCCGATATCGTTGCCCTGC
AAAGCTTCGACTATGACCTGACCGGAGCGGCACTTTCCGCTTTCAGCAAGGTATTGCGTGATGTCGGCCTCGATTACCCT
TATCAGTTTGCGGCGCTGCCGAATACGGGCATGCGCACCGACCTTGATATGGACGGAAACCGTCGCCGTGCCGAGGCGCG
GGATGCGCAGGGCTATGGTTTTTTCTCGGGTCAGGGCGGCATGGCGATCCTGTCGAAATACCCGATTGTCACGGATGAGG
TGCAGGACTTTTCGTCAATGCTCTGGCGGGATTTCCCAGGCGCCCTGCTGCCTCAAACGGCGGCAGGACCCTTTCCGTCC
GAGCAGGCGCAAGCGATCCAGCGTTTGTCGACAACCGGGCACTGGGTTGTGCCCGTCGACGTGCCCGGGCTTGGTCGCGT
GACGCTCATGACACTGCATGCCAGCCCGCCGGTGTTTGATGGGCCAGAGGATCGCAACGGCAAACGCAACCATGATGAGA
TTGTCTTTTGGCAGCGGTATCTGGACGGGAGTTTTGGCCCGGCACCGGATCGTCAGTTCGTCCTGCTGGGGGATTTCAAT
CAGGATCCTGTTGATGGCGAAGGTCTCAAGAACGCGATTCGTAGCCTTATCAGCGACCCGCGTTTGCAGGATGTCGAACC
GACCAGCACCGGTAGCGCCGAAGCCACGGGCGACCCGTTCGATACCGCCGATTGGGATGACCCGGTGCCCGGCAACATGC
GGGTTGATTACGTTTTTCCCTCGTCCGACTGGCGCGTGCAGGAAGCGGGGGTTTACTGGCCCTCGGGCCCGGCGGGGGTT
GTGGCGCAAACCGCCAGTCGCCATCGCCTTGTCTGGGTTGATCTGGCGCGTTGA

Upstream 100 bases:

>100_bases
TCAGCGCGATCGACAGTTTTGAGCAAAGCGCGGCACAAGCCCGCCCTTGGGTCTGATCACCACGTAATATCGTCCATGCG
TTAACCACTGTTAAAGGTTC

Downstream 100 bases:

>100_bases
AGCCTTTGGCCTTCTTGACCCTGCATCGCCCACACGGTAGGGCGCTACAGACCACTTTTCAGGAGAACCGCCATGGCCAA
CCCTTCCCTTTTAATTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Endonuclease/Exonuclease/Phosphatase Family Protein; Phytase; Succinyl-CoA Synthetase Alpha Subunit; Orphan Protein; PKD Domain Containing Protein; PKD Domain Protein

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MAFMVNDMMFLRHAARLRSGWFQKTRDLPDAYPESRGISKRALSKQENPHLGRARRRSRVRIAVSARSLLLTAAISLNAA
CAWSETLRVATFNTGLERKGPALLLRDIVRGEDAQIEAVASVLTTIAPDIVALQSFDYDLTGAALSAFSKVLRDVGLDYP
YQFAALPNTGMRTDLDMDGNRRRAEARDAQGYGFFSGQGGMAILSKYPIVTDEVQDFSSMLWRDFPGALLPQTAAGPFPS
EQAQAIQRLSTTGHWVVPVDVPGLGRVTLMTLHASPPVFDGPEDRNGKRNHDEIVFWQRYLDGSFGPAPDRQFVLLGDFN
QDPVDGEGLKNAIRSLISDPRLQDVEPTSTGSAEATGDPFDTADWDDPVPGNMRVDYVFPSSDWRVQEAGVYWPSGPAGV
VAQTASRHRLVWVDLAR

Sequences:

>Translated_417_residues
MAFMVNDMMFLRHAARLRSGWFQKTRDLPDAYPESRGISKRALSKQENPHLGRARRRSRVRIAVSARSLLLTAAISLNAA
CAWSETLRVATFNTGLERKGPALLLRDIVRGEDAQIEAVASVLTTIAPDIVALQSFDYDLTGAALSAFSKVLRDVGLDYP
YQFAALPNTGMRTDLDMDGNRRRAEARDAQGYGFFSGQGGMAILSKYPIVTDEVQDFSSMLWRDFPGALLPQTAAGPFPS
EQAQAIQRLSTTGHWVVPVDVPGLGRVTLMTLHASPPVFDGPEDRNGKRNHDEIVFWQRYLDGSFGPAPDRQFVLLGDFN
QDPVDGEGLKNAIRSLISDPRLQDVEPTSTGSAEATGDPFDTADWDDPVPGNMRVDYVFPSSDWRVQEAGVYWPSGPAGV
VAQTASRHRLVWVDLAR
>Mature_416_residues
AFMVNDMMFLRHAARLRSGWFQKTRDLPDAYPESRGISKRALSKQENPHLGRARRRSRVRIAVSARSLLLTAAISLNAAC
AWSETLRVATFNTGLERKGPALLLRDIVRGEDAQIEAVASVLTTIAPDIVALQSFDYDLTGAALSAFSKVLRDVGLDYPY
QFAALPNTGMRTDLDMDGNRRRAEARDAQGYGFFSGQGGMAILSKYPIVTDEVQDFSSMLWRDFPGALLPQTAAGPFPSE
QAQAIQRLSTTGHWVVPVDVPGLGRVTLMTLHASPPVFDGPEDRNGKRNHDEIVFWQRYLDGSFGPAPDRQFVLLGDFNQ
DPVDGEGLKNAIRSLISDPRLQDVEPTSTGSAEATGDPFDTADWDDPVPGNMRVDYVFPSSDWRVQEAGVYWPSGPAGVV
AQTASRHRLVWVDLAR

Specific function: Unknown

COG id: COG4222

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45936; Mature: 45805

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFMVNDMMFLRHAARLRSGWFQKTRDLPDAYPESRGISKRALSKQENPHLGRARRRSRV
CEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCEE
RIAVSARSLLLTAAISLNAACAWSETLRVATFNTGLERKGPALLLRDIVRGEDAQIEAVA
EEEEEHHHHHHHHHHHHCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHH
SVLTTIAPDIVALQSFDYDLTGAALSAFSKVLRDVGLDYPYQFAALPNTGMRTDLDMDGN
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
RRRAEARDAQGYGFFSGQGGMAILSKYPIVTDEVQDFSSMLWRDFPGALLPQTAAGPFPS
CCHHHHCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
EQAQAIQRLSTTGHWVVPVDVPGLGRVTLMTLHASPPVFDGPEDRNGKRNHDEIVFWQRY
HHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHH
LDGSFGPAPDRQFVLLGDFNQDPVDGEGLKNAIRSLISDPRLQDVEPTSTGSAEATGDPF
HCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DTADWDDPVPGNMRVDYVFPSSDWRVQEAGVYWPSGPAGVVAQTASRHRLVWVDLAR
CCCCCCCCCCCCEEEEEEECCCCCEEEECCEECCCCCCCHHHHCCCCCEEEEEEECC
>Mature Secondary Structure 
AFMVNDMMFLRHAARLRSGWFQKTRDLPDAYPESRGISKRALSKQENPHLGRARRRSRV
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCEE
RIAVSARSLLLTAAISLNAACAWSETLRVATFNTGLERKGPALLLRDIVRGEDAQIEAVA
EEEEEHHHHHHHHHHHHCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCHHHHHH
SVLTTIAPDIVALQSFDYDLTGAALSAFSKVLRDVGLDYPYQFAALPNTGMRTDLDMDGN
HHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
RRRAEARDAQGYGFFSGQGGMAILSKYPIVTDEVQDFSSMLWRDFPGALLPQTAAGPFPS
CCHHHHCCCCCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
EQAQAIQRLSTTGHWVVPVDVPGLGRVTLMTLHASPPVFDGPEDRNGKRNHDEIVFWQRY
HHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHH
LDGSFGPAPDRQFVLLGDFNQDPVDGEGLKNAIRSLISDPRLQDVEPTSTGSAEATGDPF
HCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DTADWDDPVPGNMRVDYVFPSSDWRVQEAGVYWPSGPAGVVAQTASRHRLVWVDLAR
CCCCCCCCCCCCEEEEEEECCCCCEEEECCEECCCCCCCHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA