Click here to switch to the map view.

The map label for this gene is opuAC

Identifier: 110677432

GI number: 110677432

Start: 12850

End: 13797

Strand: Direct

Name: opuAC

Synonym: RD1_0013

Alternate gene names: NA

Gene position: 12850-13797 (Clockwise)

Preceding gene: 110677427

Following gene: 110677433

Centisome position: 0.31

GC content: 57.81

Gene sequence:

>948_bases
ATGAATAAATTTACAACTGCACTGGCAACGGGCGTGCTCGCATTCGCACCTGCATTTGCAATGGCCGACAGCGACGACCC
AATCATCATTCCGATTCACAACTGGTCATCGCAAATCGTCATGTCCAACGTCGTAGGTCAGATGTTCGAGGAAATGGGCC
TGAATGTGGAATATGTCACCACGGACAGTCAGGCAGTTTATGAATCGATCCGTCTGGGCGATGTCACCCTTGGTATGGAA
GTCTGGGAAGGCGCTTTCGGTGCTTCATTCCGTGCGGCCATGGAAAAGGGCGGGATCGTCGATGCCGGCGATCACAACGC
GGTAACGCGTGAGGACTGGTGGTATCCGATGTGGACCAAGGACGCGTGCCCGGGCCTGCCATCGTGGGAAGCGCTGAACG
AATGCGCGGAAATCTTTGCAACGCCGGAGACGGGCGACAAGGGCCGCTACCTCGATGGTCCGGTGGACTGGCTCAAGCAC
GGCAAGGAACGTGTCGAAGCCCTTGGCATGGACTTTGAGGTCATCAACGCCGGGTCCGCCGCCGCACTCTGGGCCGAAAT
CGGGGCCGCAGAAGCAGACAAACGCCCCATCGTTGTCTTCAACTGGACACCGAACTTTGCCGAAGCGGTATGGCCCGGCG
AATTCGTCGAATTCCCCGAGTGGGTTGATGGATGCGACAAGGATCCGGCCGTCGGCCCGAACCCTGACGCGCTTTATGAC
TGCGGCAATCCCGCTGACGGCTACATGAAGAAAGCCGCCTGGGAAGGCATGGAAGAGAAATGGCCGGATGCATTCGCCGT
CCTGCAGCGCATCTCCTTCACCAACCCGCAAATTGCACAAATGGCGAAGCTGGTCGATATCGAAGACTATGAGCCTGAAG
AAGCAGCCGAAATCTGGCTTGAGGAAAACGAAGACCTCTGGCGCCCCTGGCTGGACGCTTCCTCCTGA

Upstream 100 bases:

>100_bases
TGATTTTTAAGAAACATGCCGAGTAGTCTATGGGCACAATCAAGCTGTGTGAGCTTGGACTCTTTTCGCAAAAAGCGAAA
GATCAGACAGGGAGAAATAA

Downstream 100 bases:

>100_bases
TCGAGGACTTCACAATTTAGCACCACTTCCCCGGGCCTTTTTCTGGCCCGGGTTCCTGCTGTCGAATTTCGGGGATTTCA
CATGAAAGATTCAATGAACG

Product: glycine betaine transporter, substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEEMGLNVEYVTTDSQAVYESIRLGDVTLGME
VWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWTKDACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKH
GKERVEALGMDFEVINAGSAAALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALYD
CGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIWLEENEDLWRPWLDASS

Sequences:

>Translated_315_residues
MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEEMGLNVEYVTTDSQAVYESIRLGDVTLGME
VWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWTKDACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKH
GKERVEALGMDFEVINAGSAAALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALYD
CGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIWLEENEDLWRPWLDASS
>Mature_315_residues
MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEEMGLNVEYVTTDSQAVYESIRLGDVTLGME
VWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWTKDACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKH
GKERVEALGMDFEVINAGSAAALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALYD
CGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIWLEENEDLWRPWLDASS

Specific function: Unknown

COG id: COG2113

COG function: function code E; ABC-type proline/glycine betaine transport systems, periplasmic components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34933; Mature: 34933

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEEMGLNVEYVT
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
TDSQAVYESIRLGDVTLGMEVWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWTK
CCHHHHHHHHHHCCEEECHHHHCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCC
DACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKHGKERVEALGMDFEVINAGSA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCH
AALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALYD
HHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCHHHCCCHHHCCCCCCCCCCCCCCCEEC
CGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIWL
CCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
EENEDLWRPWLDASS
CCCCHHHHCCCCCCC
>Mature Secondary Structure
MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEEMGLNVEYVT
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
TDSQAVYESIRLGDVTLGMEVWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWTK
CCHHHHHHHHHHCCEEECHHHHCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCC
DACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKHGKERVEALGMDFEVINAGSA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCH
AALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALYD
HHHHHHHCCCCCCCCCEEEEECCCCHHHHCCCCHHHCCCHHHCCCCCCCCCCCCCCCEEC
CGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIWL
CCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
EENEDLWRPWLDASS
CCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA