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The map label for this gene is araC [H]

Identifier: 110677427

GI number: 110677427

Start: 6341

End: 7435

Strand: Direct

Name: araC [H]

Synonym: RD1_0008

Alternate gene names: 110677427

Gene position: 6341-7435 (Clockwise)

Preceding gene: 110677425

Following gene: 110677432

Centisome position: 0.15

GC content: 59.27

Gene sequence:

>1095_bases
GTGCAACACACCCGCCTCGCGACAAAGGGTAAGCGATTTTCCACTTATTGCAAAAAAATTTTACTCAGATTAAAAAATGT
TTTGCACATGACACGTTCCACCACTTCGCCCCGATCCATTGGTTTTCTGCTTTTTCCAGGTTTTCCGATGGCCTGCCTAA
CCTCGGTAATCGAGCCTTTGCGCGCGGCGAACGAGATATCTGGAGCGACCGCCTTCACCTGGGAACTGATTGCGGAACAA
CCGGGCCCGGTGGCGTCCAGCGCGGGTATCCCTTTCGGGCCACAGAGTCTTTTGGCGGACGTGGATGCCCCGGACTACCT
GCTCCTGCTTTCTGCGCCCTCTGTGCGTTTTGCCGACCAGCGCACACCTGCGCATCTGCGGCGACTGGCACGCCATGGCT
GTACCCTCGGCGCCATCAGCGGCGGTGTGTTTCCACTGGTGCGCAGCGGCGCGGTCGAGGGCGCGCGCCTGTCCGTCCAT
TGGTGCTATGAGGCTGCATTCGCGGCGGAATTTCCCGACATGTTGCAAAGTGACGAGGTGATCGAGACATCGGATCGCTG
CGTAACGGCGTCGGGCGCCGCCGCCGCCTTCGATCTTGCCCTTGGCTTTATCGACACGGCCCTTGGGCCGAATGTTGCAA
CTGAGGTCGCATGCTGGTTCCAGCACCCGATGATGCGCAAGATCGGCGTCAAACAATCGGTGCCGGCGCATTTGACCGAC
AGCATTCAGAACGACCTGTCCCCCCTTGTGTCGGACGCCATCCGCATCTTTGCCGAAGACCTGTCAAACCCGGTATCGGT
CGCAGGCGTGGCCAAAGCCCTGAATGTGTCGCCCCGGCATCTGGAACGCAGTTTCAAGAAAGCGGCGGGACAGAACCCGA
CGACCTATTTCCGATGGTTGCGGATGCAGGCGGCGCGACAGATCGTGCTTTATACCAATGACGCCATCTCCGATGTGGCG
GCTGCGGTCGGATATGCGAGCACCAAACACTTCATCCGTCACTACCGTGCTGAATATGGCCTGAGCCCGCAGGAAGACCG
CAAGCGGATCAACCTCTATCGCACAGAAGGCAATCGCCCTGTGCCGTCGGTCTGA

Upstream 100 bases:

>100_bases
TTCTTCGCGAACGCCATGTGGGTCCTGGATCAGTTTTGTCATGGTCTTGGTACTGTCTACGTTCATGATGACCGGCCTTT
ACACTACATAAAACGAGGAT

Downstream 100 bases:

>100_bases
CCTGGAGCGTCCGGAGAGATACCCGCAGCATCATGTATCACGTAACGTGTTGAAAGCCTTGATTCCAGGCCGCGTTACGT
GATCGAGGTTTTTCGCATGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQHTRLATKGKRFSTYCKKILLRLKNVLHMTRSTTSPRSIGFLLFPGFPMACLTSVIEPLRAANEISGATAFTWELIAEQ
PGPVASSAGIPFGPQSLLADVDAPDYLLLLSAPSVRFADQRTPAHLRRLARHGCTLGAISGGVFPLVRSGAVEGARLSVH
WCYEAAFAAEFPDMLQSDEVIETSDRCVTASGAAAAFDLALGFIDTALGPNVATEVACWFQHPMMRKIGVKQSVPAHLTD
SIQNDLSPLVSDAIRIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWLRMQAARQIVLYTNDAISDVA
AAVGYASTKHFIRHYRAEYGLSPQEDRKRINLYRTEGNRPVPSV

Sequences:

>Translated_364_residues
MQHTRLATKGKRFSTYCKKILLRLKNVLHMTRSTTSPRSIGFLLFPGFPMACLTSVIEPLRAANEISGATAFTWELIAEQ
PGPVASSAGIPFGPQSLLADVDAPDYLLLLSAPSVRFADQRTPAHLRRLARHGCTLGAISGGVFPLVRSGAVEGARLSVH
WCYEAAFAAEFPDMLQSDEVIETSDRCVTASGAAAAFDLALGFIDTALGPNVATEVACWFQHPMMRKIGVKQSVPAHLTD
SIQNDLSPLVSDAIRIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWLRMQAARQIVLYTNDAISDVA
AAVGYASTKHFIRHYRAEYGLSPQEDRKRINLYRTEGNRPVPSV
>Mature_364_residues
MQHTRLATKGKRFSTYCKKILLRLKNVLHMTRSTTSPRSIGFLLFPGFPMACLTSVIEPLRAANEISGATAFTWELIAEQ
PGPVASSAGIPFGPQSLLADVDAPDYLLLLSAPSVRFADQRTPAHLRRLARHGCTLGAISGGVFPLVRSGAVEGARLSVH
WCYEAAFAAEFPDMLQSDEVIETSDRCVTASGAAAAFDLALGFIDTALGPNVATEVACWFQHPMMRKIGVKQSVPAHLTD
SIQNDLSPLVSDAIRIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWLRMQAARQIVLYTNDAISDVA
AAVGYASTKHFIRHYRAEYGLSPQEDRKRINLYRTEGNRPVPSV

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39695; Mature: 39695

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHTRLATKGKRFSTYCKKILLRLKNVLHMTRSTTSPRSIGFLLFPGFPMACLTSVIEPL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHH
RAANEISGATAFTWELIAEQPGPVASSAGIPFGPQSLLADVDAPDYLLLLSAPSVRFADQ
HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCC
RTPAHLRRLARHGCTLGAISGGVFPLVRSGAVEGARLSVHWCYEAAFAAEFPDMLQSDEV
CCHHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
IETSDRCVTASGAAAAFDLALGFIDTALGPNVATEVACWFQHPMMRKIGVKQSVPAHLTD
CCCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SIQNDLSPLVSDAIRIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
RMQAARQIVLYTNDAISDVAAAVGYASTKHFIRHYRAEYGLSPQEDRKRINLYRTEGNRP
HHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEECCCCCC
VPSV
CCCC
>Mature Secondary Structure
MQHTRLATKGKRFSTYCKKILLRLKNVLHMTRSTTSPRSIGFLLFPGFPMACLTSVIEPL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHH
RAANEISGATAFTWELIAEQPGPVASSAGIPFGPQSLLADVDAPDYLLLLSAPSVRFADQ
HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCC
RTPAHLRRLARHGCTLGAISGGVFPLVRSGAVEGARLSVHWCYEAAFAAEFPDMLQSDEV
CCHHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCC
IETSDRCVTASGAAAAFDLALGFIDTALGPNVATEVACWFQHPMMRKIGVKQSVPAHLTD
CCCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SIQNDLSPLVSDAIRIFAEDLSNPVSVAGVAKALNVSPRHLERSFKKAAGQNPTTYFRWL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
RMQAARQIVLYTNDAISDVAAAVGYASTKHFIRHYRAEYGLSPQEDRKRINLYRTEGNRP
HHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEECCCCCC
VPSV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]