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The map label for this gene is yhbH [C]

Identifier: 110635991

GI number: 110635991

Start: 3955704

End: 3956264

Strand: Reverse

Name: yhbH [C]

Synonym: Meso_3666

Alternate gene names: 110635991

Gene position: 3956264-3955704 (Counterclockwise)

Preceding gene: 110635992

Following gene: 110635990

Centisome position: 89.66

GC content: 57.75

Gene sequence:

>561_bases
ATGGGCCTCCGCATTTCTGGCAAACATATGGACATCGGCGCGGCGTTTCGCACACGGATCGAAAGCCGGATCGTCGAAGC
GATGGAGAAATATTTCGACGGCGGTTTTTCAGGGCGTGTGGCGGTGGAAAAATCGCGCGGACGCTTCACCGCCGACTGCT
CTGTCCACCTCGATACGGGCGTGGTCCTGCAGTCCACAGGCGAGGCCCACGATCCTCAACTCGCCTTTGGGACAGCTGCC
GAGCGCATAGAGAAGCAGCTTAGGAGATACAAGCGAAAGCTGAAATCGCATGCGGCCGGCCAGAATGGGAACGGCCGTTT
GGCAGAAGATCGGGTGGTGGAACCGGCCCAGGAAGATCGGGAGGATTTCGCCGATGATCTTGCACCGGCGGTGGCTGCCG
AATTCCTCGCGCCGTTCAAAGCCTCCGCTGCAATGGAACTAGATATGAAGGACAGCCCTGTTTTTGTTTTCCGCATTTCA
GGCAGCAATGCCGGGAAAACCGTCTATCGGCGTGCCGATGGCAATATCGGATGGATCGATCCTTCCGCTACAAACGGATA
G

Upstream 100 bases:

>100_bases
CTGGACGGACTTTAATTTGCTGCCGCAGAACCTTGTATGCGCGGGCCACGGGTATAAACTCGGATCTGTTGGTATCCTGA
CCAGGAAAGGTCGTTCTCTC

Downstream 100 bases:

>100_bases
GCTGGGCCGCCGGCCCGTCAAAGGGAATGGCAAGCAGGGGAATATGAAATGGATCTGAGCGATCTTATCGAGCCTTCGGC
GATCCTGCCTGCCTTGAAGG

Product: sigma 54 modulation protein / SSU ribosomal protein S30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MGLRISGKHMDIGAAFRTRIESRIVEAMEKYFDGGFSGRVAVEKSRGRFTADCSVHLDTGVVLQSTGEAHDPQLAFGTAA
ERIEKQLRRYKRKLKSHAAGQNGNGRLAEDRVVEPAQEDREDFADDLAPAVAAEFLAPFKASAAMELDMKDSPVFVFRIS
GSNAGKTVYRRADGNIGWIDPSATNG

Sequences:

>Translated_186_residues
MGLRISGKHMDIGAAFRTRIESRIVEAMEKYFDGGFSGRVAVEKSRGRFTADCSVHLDTGVVLQSTGEAHDPQLAFGTAA
ERIEKQLRRYKRKLKSHAAGQNGNGRLAEDRVVEPAQEDREDFADDLAPAVAAEFLAPFKASAAMELDMKDSPVFVFRIS
GSNAGKTVYRRADGNIGWIDPSATNG
>Mature_185_residues
GLRISGKHMDIGAAFRTRIESRIVEAMEKYFDGGFSGRVAVEKSRGRFTADCSVHLDTGVVLQSTGEAHDPQLAFGTAAE
RIEKQLRRYKRKLKSHAAGQNGNGRLAEDRVVEPAQEDREDFADDLAPAVAAEFLAPFKASAAMELDMKDSPVFVFRISG
SNAGKTVYRRADGNIGWIDPSATNG

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20277; Mature: 20146

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRISGKHMDIGAAFRTRIESRIVEAMEKYFDGGFSGRVAVEKSRGRFTADCSVHLDTG
CCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCC
VVLQSTGEAHDPQLAFGTAAERIEKQLRRYKRKLKSHAAGQNGNGRLAEDRVVEPAQEDR
EEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EDFADDLAPAVAAEFLAPFKASAAMELDMKDSPVFVFRISGSNAGKTVYRRADGNIGWID
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCEEEEC
PSATNG
CCCCCC
>Mature Secondary Structure 
GLRISGKHMDIGAAFRTRIESRIVEAMEKYFDGGFSGRVAVEKSRGRFTADCSVHLDTG
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCC
VVLQSTGEAHDPQLAFGTAAERIEKQLRRYKRKLKSHAAGQNGNGRLAEDRVVEPAQEDR
EEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EDFADDLAPAVAAEFLAPFKASAAMELDMKDSPVFVFRISGSNAGKTVYRRADGNIGWID
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCEEEEC
PSATNG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]