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The map label for this gene is ctpA [H]

Identifier: 110635779

GI number: 110635779

Start: 3728759

End: 3730093

Strand: Reverse

Name: ctpA [H]

Synonym: Meso_3451

Alternate gene names: 110635779

Gene position: 3730093-3728759 (Counterclockwise)

Preceding gene: 110635780

Following gene: 110635778

Centisome position: 84.54

GC content: 59.7

Gene sequence:

>1335_bases
ATGATTCGTAAATTGTCGCTCTTGTTCGCCGGTGCGTTGATGGGCGCATCCGCCATGAGCCTCGTCTACGGGACGAATGG
CACGGCAGCGATCGCGGCGGACACCGACACATACAGACAGCTTGCCATCTTCGGCGACATCTTCGAACGTGTGCGCGCGC
AGTATGTGACACCGCCGGATGACAAAAAATTGATCGAGAATGCCATCAACGGCATGCTCACCTCGCTCGATCCGCACTCC
TCCTACCTCAATGCCGAGGCGGCGCAGGATATGCGCGTGCAGACCAAAGGCGAGTTCGGGGGCCTTGGCATCGAGGTCAC
GATGGAGAACGAGCTGGTCAAGGTCGTGGCTCCGATCGACGACACACCCGCTTCGCGCGCCGGAATCCTTTCGGGCGACC
TCATCGAGAAGATCGATGGCGAGGAAGTACGTGGGATGACGCTCAATGATGCGGTCGACAAGATGCGCGGTCTCGTCAAC
ACACCCATCGAGCTTACCGTCCTGCGGGAGGGGCAGAGCAAGCCCCTGACCTTCAAGATCATTCGCGACACGATCAAGGT
GAAGGCCGTCAAGTCGAGGGTTGAAGGCGACGATATCGGATATCTCAAGATCACCTCCTTCACGGAGAAGACGACGGACG
ACCTGCGCGCGGCCATTGAGGACATCCGCAAGCAGGTGCCTGAAGACAAGCTGAAGGGCTATGTGCTCGACCTGCGGCTC
AATCCCGGCGGTCTGCTCGATCAGGCGGTCAATGTATCGGACGCTTTTCTGGAGCGCGGTGAAGTCGTCTCAACGCGAGG
CCGCGAGTCTGGGGATATCGCACGATTCAGCTCTCAGGCTGGTGACCTCACCGGCGGCAAGCCACTGGTCGTCCTGATCA
ATGGCGGTTCTGCAAGCGCCTCTGAAATTGTGGCCGGTGCGTTGAAAGACCATCGCCGGGCGACGCTGGTCGGCACGCGA
TCGTTCGGCAAGGGCTCCGTGCAGACGATCATTCCGCTCGGCGAAAATGGTGCTCTGCGTTTGACGACCGCCCTGTACTA
CACGCCTTCGGGCGAGTCGATCCAAGGCAAAGGCATCACGCCTGATATCAAGGTGGAACAGCCTTTGCCCGAGGATCTGC
AGGATGTCGATCTTTCGCGCGGCGAGTCCGACCTGCGCGGTCATATTCGCGGCGCGGAGGAAGACGAAGAAGGGTCCGGC
TCGATCGCATATGTGCCGCAGGACCCGAAAGAGGACGTGCAGCTTTCCTACGCACTCGATCTCATCCGCGGCGTGAAGAC
GGATCCTGCATATCCTGCCAGCCCAGATAAAGCGGTGATGAACCAGCAGCAGTAA

Upstream 100 bases:

>100_bases
GATGGCGCGGTGCCGGAACTATATGTAGAATTCAGGAAAGACGGGAAACCGATAGACCCGAAGCTCTGGTGGGTTCGGGA
ATTCTCTGGAAGGACGGGAA

Downstream 100 bases:

>100_bases
CAATCAGCGGCGCATCTCAGGAAGGGTGCGCCGCATCCGCTTTTCGGGGGCGACATAGGGGCGGTCGCGGGGATGTATGG
ACTCTGCTCGCAGTGAACTC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MIRKLSLLFAGALMGASAMSLVYGTNGTAAIAADTDTYRQLAIFGDIFERVRAQYVTPPDDKKLIENAINGMLTSLDPHS
SYLNAEAAQDMRVQTKGEFGGLGIEVTMENELVKVVAPIDDTPASRAGILSGDLIEKIDGEEVRGMTLNDAVDKMRGLVN
TPIELTVLREGQSKPLTFKIIRDTIKVKAVKSRVEGDDIGYLKITSFTEKTTDDLRAAIEDIRKQVPEDKLKGYVLDLRL
NPGGLLDQAVNVSDAFLERGEVVSTRGRESGDIARFSSQAGDLTGGKPLVVLINGGSASASEIVAGALKDHRRATLVGTR
SFGKGSVQTIIPLGENGALRLTTALYYTPSGESIQGKGITPDIKVEQPLPEDLQDVDLSRGESDLRGHIRGAEEDEEGSG
SIAYVPQDPKEDVQLSYALDLIRGVKTDPAYPASPDKAVMNQQQ

Sequences:

>Translated_444_residues
MIRKLSLLFAGALMGASAMSLVYGTNGTAAIAADTDTYRQLAIFGDIFERVRAQYVTPPDDKKLIENAINGMLTSLDPHS
SYLNAEAAQDMRVQTKGEFGGLGIEVTMENELVKVVAPIDDTPASRAGILSGDLIEKIDGEEVRGMTLNDAVDKMRGLVN
TPIELTVLREGQSKPLTFKIIRDTIKVKAVKSRVEGDDIGYLKITSFTEKTTDDLRAAIEDIRKQVPEDKLKGYVLDLRL
NPGGLLDQAVNVSDAFLERGEVVSTRGRESGDIARFSSQAGDLTGGKPLVVLINGGSASASEIVAGALKDHRRATLVGTR
SFGKGSVQTIIPLGENGALRLTTALYYTPSGESIQGKGITPDIKVEQPLPEDLQDVDLSRGESDLRGHIRGAEEDEEGSG
SIAYVPQDPKEDVQLSYALDLIRGVKTDPAYPASPDKAVMNQQQ
>Mature_444_residues
MIRKLSLLFAGALMGASAMSLVYGTNGTAAIAADTDTYRQLAIFGDIFERVRAQYVTPPDDKKLIENAINGMLTSLDPHS
SYLNAEAAQDMRVQTKGEFGGLGIEVTMENELVKVVAPIDDTPASRAGILSGDLIEKIDGEEVRGMTLNDAVDKMRGLVN
TPIELTVLREGQSKPLTFKIIRDTIKVKAVKSRVEGDDIGYLKITSFTEKTTDDLRAAIEDIRKQVPEDKLKGYVLDLRL
NPGGLLDQAVNVSDAFLERGEVVSTRGRESGDIARFSSQAGDLTGGKPLVVLINGGSASASEIVAGALKDHRRATLVGTR
SFGKGSVQTIIPLGENGALRLTTALYYTPSGESIQGKGITPDIKVEQPLPEDLQDVDLSRGESDLRGHIRGAEEDEEGSG
SIAYVPQDPKEDVQLSYALDLIRGVKTDPAYPASPDKAVMNQQQ

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=321, Percent_Identity=30.2180685358255, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47731; Mature: 47731

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKLSLLFAGALMGASAMSLVYGTNGTAAIAADTDTYRQLAIFGDIFERVRAQYVTPPD
CCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCC
DKKLIENAINGMLTSLDPHSSYLNAEAAQDMRVQTKGEFGGLGIEVTMENELVKVVAPID
HHHHHHHHHHHHEECCCCCHHHCCCHHHHCCEEEECCCCCCEEEEEEECCCEEEEEECCC
DTPASRAGILSGDLIEKIDGEEVRGMTLNDAVDKMRGLVNTPIELTVLREGQSKPLTFKI
CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
IRDTIKVKAVKSRVEGDDIGYLKITSFTEKTTDDLRAAIEDIRKQVPEDKLKGYVLDLRL
EHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEE
NPGGLLDQAVNVSDAFLERGEVVSTRGRESGDIARFSSQAGDLTGGKPLVVLINGGSASA
CCCCHHHHHCCHHHHHHHCCCEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCH
SEIVAGALKDHRRATLVGTRSFGKGSVQTIIPLGENGALRLTTALYYTPSGESIQGKGIT
HHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEECCCCC
PDIKVEQPLPEDLQDVDLSRGESDLRGHIRGAEEDEEGSGSIAYVPQDPKEDVQLSYALD
CCCEECCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
LIRGVKTDPAYPASPDKAVMNQQQ
HHHCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure
MIRKLSLLFAGALMGASAMSLVYGTNGTAAIAADTDTYRQLAIFGDIFERVRAQYVTPPD
CCCHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCC
DKKLIENAINGMLTSLDPHSSYLNAEAAQDMRVQTKGEFGGLGIEVTMENELVKVVAPID
HHHHHHHHHHHHEECCCCCHHHCCCHHHHCCEEEECCCCCCEEEEEEECCCEEEEEECCC
DTPASRAGILSGDLIEKIDGEEVRGMTLNDAVDKMRGLVNTPIELTVLREGQSKPLTFKI
CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
IRDTIKVKAVKSRVEGDDIGYLKITSFTEKTTDDLRAAIEDIRKQVPEDKLKGYVLDLRL
EHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEE
NPGGLLDQAVNVSDAFLERGEVVSTRGRESGDIARFSSQAGDLTGGKPLVVLINGGSASA
CCCCHHHHHCCHHHHHHHCCCEEECCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCH
SEIVAGALKDHRRATLVGTRSFGKGSVQTIIPLGENGALRLTTALYYTPSGESIQGKGIT
HHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEECCCCC
PDIKVEQPLPEDLQDVDLSRGESDLRGHIRGAEEDEEGSGSIAYVPQDPKEDVQLSYALD
CCCEECCCCCCHHHHHHCCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
LIRGVKTDPAYPASPDKAVMNQQQ
HHHCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]