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The map label for this gene is yafK [H]

Identifier: 110635389

GI number: 110635389

Start: 3334898

End: 3336217

Strand: Reverse

Name: yafK [H]

Synonym: Meso_3060

Alternate gene names: 110635389

Gene position: 3336217-3334898 (Counterclockwise)

Preceding gene: 110635390

Following gene: 110635388

Centisome position: 75.61

GC content: 60.68

Gene sequence:

>1320_bases
ATGGCGACCAGGACCCGAGACTTTTGCATGAAAAGCCGTTTTGCTTGTGCTGTGCTTTTGCCGGCCTTCATTCTCGTCGG
ATGCAGCGGATCCCTTGAGGACCTCGCGCCCAAGGCAGCGGAGCGGAAGCTCCCGCCGGAAGTCACGGAAATCATCAAGG
CGAAGGGCATGAGCACGAATGCCCCCATCATGATGCGTGTCTTCAAGGAAGAGGGCGTGCTCGAGGTCTGGAAGCAGAAA
AAGGACGGACGCTACGACCTCGTAAAGAGCTACGAGATCTGCAAATGGTCCGGCAAGCTCGGGCCGAAATATACGGAAGG
CGACCGTCAGGCGCCGGAAGGTTTCTATACCATCCGGCCGCAGCAGATGAATCCGAATTCCAGCTATCATCTGTCCTTCA
ATATCGGTTTCCCCAACGCTTACGACCGCGCGAACGGCCGCACCGGCCAGCACCTGATGGTGCATGGCGCCTGCTCTTCA
GCGGGCTGCTACTCCATGACCGACGAGCAGGTGGAGGAAATCTACGCCTTCGCGCGTGATGCATTTCGCGGCGGGCAGGA
AGCCTTTCAATTCCAGGCCTTTCCGTTCCGCATGACGGCACAGAACATGGCGCGCTACCGGAACGATCCGAACTATCCTT
TCTGGCAGATGCTGAAGGAAGGCTATGATCATTTCGAGATGACCAAGGCGCCGCCCAAGGTCGATGTTTGCGAAGCGCGA
TATGTCTTCAACCGTGTGGCAGCGGAAGGCTATACTTTCGAGCCGACGGCGGCCTGCCCGCCCTCGACGCAGCCTGAAGG
GCTGTTGATGGCCTATCAGGCCTATAAGAAGAAGCAGGATCTTGCCATCTCAAAAGCGGCGTGGAGCTGGTCGAAGAAGG
AACCGAAGCCGACCATAGCCGGCGTTGAGGAAGCGATGCTGGTGGCCGATTGGAGCCGCCGCCGCAGCCGCGGTGAGAGG
GTTAGCCGTGAGCCGCCTTCGCTGAATCCGGTGACGGTTGCGAAATCCAAACCCCTGATCTCCACGCCTGTCTCGGCCTA
TGCGGCAGTGTCTCAGGGATCTCCACAAACCCAGGCCGCTGCCGCCGCCGCCCCCGCGCAGGAGCAACAGCGTGCTCAGG
TCGGGATTGCGAACAACGAAGCGAATGCAACGGTGGCGGAATCACAGGTCGAGGTGGGTGCCACGCCGCTCATCACGGGA
ACCACGCCTGTTCCGACGCCCAATCCCAACAGCGAGGCCTCCGCTCCCACCGTTCAGGTGCAGCCGGCTCCCGAGCAGGG
CGGCCGCATGAGCAGGCTCTGGAATGCGCTACGCAGGTGA

Upstream 100 bases:

>100_bases
CTTCAGGATAAGCGGTAATAGCCTGTTGCTGGTAATGATTTGTAAAGCCTAACGGGTATTTAGTAGTGGGGACACCCGCC
TCCTGCGCCGGGAGAGGGGA

Downstream 100 bases:

>100_bases
AGCGAATATAGTGGAAGTTTATGATCTTAAGGGGCTTAACTGCCCTTTGCCCGTGCTGAAGGCGAAGAAGCGCCTTGCCG
GCATGCCGGCTGGTCAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MATRTRDFCMKSRFACAVLLPAFILVGCSGSLEDLAPKAAERKLPPEVTEIIKAKGMSTNAPIMMRVFKEEGVLEVWKQK
KDGRYDLVKSYEICKWSGKLGPKYTEGDRQAPEGFYTIRPQQMNPNSSYHLSFNIGFPNAYDRANGRTGQHLMVHGACSS
AGCYSMTDEQVEEIYAFARDAFRGGQEAFQFQAFPFRMTAQNMARYRNDPNYPFWQMLKEGYDHFEMTKAPPKVDVCEAR
YVFNRVAAEGYTFEPTAACPPSTQPEGLLMAYQAYKKKQDLAISKAAWSWSKKEPKPTIAGVEEAMLVADWSRRRSRGER
VSREPPSLNPVTVAKSKPLISTPVSAYAAVSQGSPQTQAAAAAAPAQEQQRAQVGIANNEANATVAESQVEVGATPLITG
TTPVPTPNPNSEASAPTVQVQPAPEQGGRMSRLWNALRR

Sequences:

>Translated_439_residues
MATRTRDFCMKSRFACAVLLPAFILVGCSGSLEDLAPKAAERKLPPEVTEIIKAKGMSTNAPIMMRVFKEEGVLEVWKQK
KDGRYDLVKSYEICKWSGKLGPKYTEGDRQAPEGFYTIRPQQMNPNSSYHLSFNIGFPNAYDRANGRTGQHLMVHGACSS
AGCYSMTDEQVEEIYAFARDAFRGGQEAFQFQAFPFRMTAQNMARYRNDPNYPFWQMLKEGYDHFEMTKAPPKVDVCEAR
YVFNRVAAEGYTFEPTAACPPSTQPEGLLMAYQAYKKKQDLAISKAAWSWSKKEPKPTIAGVEEAMLVADWSRRRSRGER
VSREPPSLNPVTVAKSKPLISTPVSAYAAVSQGSPQTQAAAAAAPAQEQQRAQVGIANNEANATVAESQVEVGATPLITG
TTPVPTPNPNSEASAPTVQVQPAPEQGGRMSRLWNALRR
>Mature_438_residues
ATRTRDFCMKSRFACAVLLPAFILVGCSGSLEDLAPKAAERKLPPEVTEIIKAKGMSTNAPIMMRVFKEEGVLEVWKQKK
DGRYDLVKSYEICKWSGKLGPKYTEGDRQAPEGFYTIRPQQMNPNSSYHLSFNIGFPNAYDRANGRTGQHLMVHGACSSA
GCYSMTDEQVEEIYAFARDAFRGGQEAFQFQAFPFRMTAQNMARYRNDPNYPFWQMLKEGYDHFEMTKAPPKVDVCEARY
VFNRVAAEGYTFEPTAACPPSTQPEGLLMAYQAYKKKQDLAISKAAWSWSKKEPKPTIAGVEEAMLVADWSRRRSRGERV
SREPPSLNPVTVAKSKPLISTPVSAYAAVSQGSPQTQAAAAAAPAQEQQRAQVGIANNEANATVAESQVEVGATPLITGT
TPVPTPNPNSEASAPTVQVQPAPEQGGRMSRLWNALRR

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=228, Percent_Identity=41.6666666666667, Blast_Score=200, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 48488; Mature: 48357

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRTRDFCMKSRFACAVLLPAFILVGCSGSLEDLAPKAAERKLPPEVTEIIKAKGMSTN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCHHHHHHHHHCCCCCC
APIMMRVFKEEGVLEVWKQKKDGRYDLVKSYEICKWSGKLGPKYTEGDRQAPEGFYTIRP
CCCEEEEHHHCCHHHHHHCCCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCEEEECC
QQMNPNSSYHLSFNIGFPNAYDRANGRTGQHLMVHGACSSAGCYSMTDEQVEEIYAFARD
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
AFRGGQEAFQFQAFPFRMTAQNMARYRNDPNYPFWQMLKEGYDHFEMTKAPPKVDVCEAR
HHCCCHHHHEEECCCEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHEECCCCCCCCHHHHH
YVFNRVAAEGYTFEPTAACPPSTQPEGLLMAYQAYKKKQDLAISKAAWSWSKKEPKPTIA
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
GVEEAMLVADWSRRRSRGERVSREPPSLNPVTVAKSKPLISTPVSAYAAVSQGSPQTQAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCHHHHH
AAAAPAQEQQRAQVGIANNEANATVAESQVEVGATPLITGTTPVPTPNPNSEASAPTVQV
HHHCCHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEE
QPAPEQGGRMSRLWNALRR
ECCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ATRTRDFCMKSRFACAVLLPAFILVGCSGSLEDLAPKAAERKLPPEVTEIIKAKGMSTN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCHHHHHHHHHCCCCCC
APIMMRVFKEEGVLEVWKQKKDGRYDLVKSYEICKWSGKLGPKYTEGDRQAPEGFYTIRP
CCCEEEEHHHCCHHHHHHCCCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCEEEECC
QQMNPNSSYHLSFNIGFPNAYDRANGRTGQHLMVHGACSSAGCYSMTDEQVEEIYAFARD
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
AFRGGQEAFQFQAFPFRMTAQNMARYRNDPNYPFWQMLKEGYDHFEMTKAPPKVDVCEAR
HHCCCHHHHEEECCCEEHHHHHHHHHCCCCCCCHHHHHHHCCCHHEECCCCCCCCHHHHH
YVFNRVAAEGYTFEPTAACPPSTQPEGLLMAYQAYKKKQDLAISKAAWSWSKKEPKPTIA
HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
GVEEAMLVADWSRRRSRGERVSREPPSLNPVTVAKSKPLISTPVSAYAAVSQGSPQTQAA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCHHHHH
AAAAPAQEQQRAQVGIANNEANATVAESQVEVGATPLITGTTPVPTPNPNSEASAPTVQV
HHHCCHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEE
QPAPEQGGRMSRLWNALRR
ECCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]