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The map label for this gene is rhmD [H]

Identifier: 110635375

GI number: 110635375

Start: 3320447

End: 3321607

Strand: Reverse

Name: rhmD [H]

Synonym: Meso_3046

Alternate gene names: 110635375

Gene position: 3321607-3320447 (Counterclockwise)

Preceding gene: 110635380

Following gene: 110635374

Centisome position: 75.28

GC content: 63.48

Gene sequence:

>1161_bases
TTGAATCTTGCGATCCAGACCGTCACGGCCTATCCAGCCTATATCCCGGTGACGCTTTCGATCGGGCCGGTGGAGGTCGC
GACCTCCTTGTCCTGCGCAGTGGTCGAGGTGACGACCGCTGACGGCGTGGTGGGCTACGGCTTCACAGCCATTACGGACG
AAGAGGTGATCGTCGCGATCGTGAAGGAACTGGTCGCACCCGAAATCGTCTCGCTCAATGCGCTCGAGCGCGAGAAAATC
GCCGAACGGCTCTATTGGCTGCTCACGCCGCGCGGCCAGACGGGTTACGCCAGCCACGTGGCTTCGGCGGTTGATCTGGC
ACTTTGGGATATCCTCGGCAAGGTCACCGGCCAACCCTGTTGGAAGCTCCTCGGCGGTGCTCGCGAAGAGGTCCCGCTGT
ACGTGACCTTCGGCTTTGGTTCATTCGACCGTGACCAGCTGGTCGACGCGGCCCGGCATCTGAAGGCTGACGGTGTAACG
CATTTCAAGATGGTTGTCGGCCATCACGCCCTGAAGCGCCGCAATGCAGGCGAGGATCTGCGCGCTATTGTCGCCGAGGA
CGCGGAGCGGGTGCGGCTGGTTCGTGAGGCGGTTGGCGAGGGTTGCGAGATCTTCGTCGATGCGAACTGCAGTCTCGACC
CCGGGTCTGCGGCGTGGCTCGCCAGCCGCCTGCGCGACCTTAACGTCGCGTTTTTCGAAGAACCGGTGCGTGACAACGAT
CCAGCCCGGCTCGCCGAGCTCCGCCGCACCTCCAATCTGCGTGTCGCTGCGGGCCAGAATGAAGGGCAGTTGTGGCGCTT
CCAATCGCTTCTGGACGCCGATGCCGTGGACGTGCTTCAACCCAACGTGGTCATCTGCGGCGGGCTGACCGCAGGCGCCA
AGATTGCTGCCCTGGCTCAGGCCCGCAACATCCAGATCGCCAATGGCGGCGCCTTTCCCTTCCACAACATGCATCTTCAC
GCTGGTCTCGCCCATGGCGGAATGGTCGAGTGGCACCTGATCTCGGTGGAGATGTGCAAGGCGCTGTACAGCGGCCTTCC
CCGGCGCCAGGGGTCCGTACTGAAATTACCGGACACACCGGGGCTGGGTTTCGCAGCGGATCCGGCTGCATTGCGCGAGT
TTGCGGCACGGCCGACATCGCGCGGAAAAGGAAAGGGCTGA

Upstream 100 bases:

>100_bases
GGAGAGCTTGATCTGCGAAAATTAGATTGATATCAAACTTTCTGCATGTCAACCATCTTGAAATCAACTTATTCGGCGTG
CTGCCCAAGGAGGGAAAGCT

Downstream 100 bases:

>100_bases
ATGCGCTACCGGTCGAAAGCGCCTCTGGTCTGTGCGGATGATCTGCGGGAAGCAGCCCGCCGGCGCATGCCGCGCTTCGC
GTTCGATTTCATCGACGGGG

Product: mandelate racemase/muconate lactonizing-like protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MNLAIQTVTAYPAYIPVTLSIGPVEVATSLSCAVVEVTTADGVVGYGFTAITDEEVIVAIVKELVAPEIVSLNALEREKI
AERLYWLLTPRGQTGYASHVASAVDLALWDILGKVTGQPCWKLLGGAREEVPLYVTFGFGSFDRDQLVDAARHLKADGVT
HFKMVVGHHALKRRNAGEDLRAIVAEDAERVRLVREAVGEGCEIFVDANCSLDPGSAAWLASRLRDLNVAFFEEPVRDND
PARLAELRRTSNLRVAAGQNEGQLWRFQSLLDADAVDVLQPNVVICGGLTAGAKIAALAQARNIQIANGGAFPFHNMHLH
AGLAHGGMVEWHLISVEMCKALYSGLPRRQGSVLKLPDTPGLGFAADPAALREFAARPTSRGKGKG

Sequences:

>Translated_386_residues
MNLAIQTVTAYPAYIPVTLSIGPVEVATSLSCAVVEVTTADGVVGYGFTAITDEEVIVAIVKELVAPEIVSLNALEREKI
AERLYWLLTPRGQTGYASHVASAVDLALWDILGKVTGQPCWKLLGGAREEVPLYVTFGFGSFDRDQLVDAARHLKADGVT
HFKMVVGHHALKRRNAGEDLRAIVAEDAERVRLVREAVGEGCEIFVDANCSLDPGSAAWLASRLRDLNVAFFEEPVRDND
PARLAELRRTSNLRVAAGQNEGQLWRFQSLLDADAVDVLQPNVVICGGLTAGAKIAALAQARNIQIANGGAFPFHNMHLH
AGLAHGGMVEWHLISVEMCKALYSGLPRRQGSVLKLPDTPGLGFAADPAALREFAARPTSRGKGKG
>Mature_386_residues
MNLAIQTVTAYPAYIPVTLSIGPVEVATSLSCAVVEVTTADGVVGYGFTAITDEEVIVAIVKELVAPEIVSLNALEREKI
AERLYWLLTPRGQTGYASHVASAVDLALWDILGKVTGQPCWKLLGGAREEVPLYVTFGFGSFDRDQLVDAARHLKADGVT
HFKMVVGHHALKRRNAGEDLRAIVAEDAERVRLVREAVGEGCEIFVDANCSLDPGSAAWLASRLRDLNVAFFEEPVRDND
PARLAELRRTSNLRVAAGQNEGQLWRFQSLLDADAVDVLQPNVVICGGLTAGAKIAALAQARNIQIANGGAFPFHNMHLH
AGLAHGGMVEWHLISVEMCKALYSGLPRRQGSVLKLPDTPGLGFAADPAALREFAARPTSRGKGKG

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: COG4948

COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Escherichia coli, GI226510960, Length=281, Percent_Identity=31.3167259786477, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI48994953, Length=360, Percent_Identity=26.3888888888889, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 41473; Mature: 41473

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAIQTVTAYPAYIPVTLSIGPVEVATSLSCAVVEVTTADGVVGYGFTAITDEEVIVAI
CCEEEEEEECCCCEEEEEEEECCHHHHCCCEEEEEEEEECCCEEECCEEEECCCHHHHHH
VKELVAPEIVSLNALEREKIAERLYWLLTPRGQTGYASHVASAVDLALWDILGKVTGQPC
HHHHHCCCCEECCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
WKLLGGAREEVPLYVTFGFGSFDRDQLVDAARHLKADGVTHFKMVVGHHALKRRNAGEDL
HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
RAIVAEDAERVRLVREAVGEGCEIFVDANCSLDPGSAAWLASRLRDLNVAFFEEPVRDND
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCC
PARLAELRRTSNLRVAAGQNEGQLWRFQSLLDADAVDVLQPNVVICGGLTAGAKIAALAQ
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHH
ARNIQIANGGAFPFHNMHLHAGLAHGGMVEWHLISVEMCKALYSGLPRRQGSVLKLPDTP
HCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCEEECCCCC
GLGFAADPAALREFAARPTSRGKGKG
CCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNLAIQTVTAYPAYIPVTLSIGPVEVATSLSCAVVEVTTADGVVGYGFTAITDEEVIVAI
CCEEEEEEECCCCEEEEEEEECCHHHHCCCEEEEEEEEECCCEEECCEEEECCCHHHHHH
VKELVAPEIVSLNALEREKIAERLYWLLTPRGQTGYASHVASAVDLALWDILGKVTGQPC
HHHHHCCCCEECCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
WKLLGGAREEVPLYVTFGFGSFDRDQLVDAARHLKADGVTHFKMVVGHHALKRRNAGEDL
HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
RAIVAEDAERVRLVREAVGEGCEIFVDANCSLDPGSAAWLASRLRDLNVAFFEEPVRDND
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCC
PARLAELRRTSNLRVAAGQNEGQLWRFQSLLDADAVDVLQPNVVICGGLTAGAKIAALAQ
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHCCCCEEEEECCCCCHHHHHHHH
ARNIQIANGGAFPFHNMHLHAGLAHGGMVEWHLISVEMCKALYSGLPRRQGSVLKLPDTP
HCEEEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCEEECCCCC
GLGFAADPAALREFAARPTSRGKGKG
CCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA