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The map label for this gene is cc4 [H]

Identifier: 110635126

GI number: 110635126

Start: 3039357

End: 3040496

Strand: Reverse

Name: cc4 [H]

Synonym: Meso_2793

Alternate gene names: 110635126

Gene position: 3040496-3039357 (Counterclockwise)

Preceding gene: 110635127

Following gene: 110635125

Centisome position: 68.91

GC content: 64.12

Gene sequence:

>1140_bases
ATGATTATGCGCCGACTTGACCGCGGCTGGTGGAGAGCGGTTGGCCTGGGCGCTGTCCTCGCCCTGGCCGGCGCGGGCTT
GCTCGGCGGGGTTTTTATCCTTTCGGGCCTCTATAATGTCGCTGCATCCCGCCAGCATTTCGATATCACCAACATGCTTA
TCCGCCTCACGCTCACGCGGTCGGTGGCCACTCGAAGCATGGGGGTCGACGTCCCAGATCTTTCGGACGAGCGGCTGGCG
GCGCTTGGCGCAAGGCATTTCGATCTGGGATGCGCGCCCTGCCATGCATCGCCCGGCACTGAGCAAAATCCGATAGCGGC
CGAGATGTACCCGGCGCCGCCGCCGCTCACGCACGCCGCCGAGGATTGGGACGCGGCGGAACTCTTCTGGATCGTGAAGC
ACGGGCTCAAATTTACCGGAATGCCATCCTGGCCTGCTCTTGAGCGCGAAGACGAGATCTGGGCGCTGGTGGCATTCCTG
GAGCGGCTGCCGGAAAGCGGAGCGCAGGACTATGCCGCACTGGCGGGAAGGAGGAGCGGAACAGGCGAGGTGGAATTCAC
TTTCGGCGGGCAGAACGCCACGGAAACCCTGTGCGCCAACTGCCACGGAGACGAGAACAATCCTCCGGTGCATCATCTTG
CGCCCGGGATTGCCGGGCAGAAAGCGCCTTATCTTCTGCGCGCGCTCGAAGAGTATGCGAGCGGCGAGCGCGAAAGCGGC
ATGATGGAACCGATCGCGGCGGCACTTGCTCCCGAGGAAATTGAACAGCTCGCAAGGCATTATGCGGAGGAGCGCGTTCT
TCCATCGGCTGCCGGCGTGGACATGGAAGCGGCCGCACGGGGCGCGGAGATCGCACGCAACGGTGCGCGGGCAGATGACA
TTCCTGCGTGCCTCTCCTGCCATGGCGCGAATACGTCCGGCCAGTTCCCCCGCCTGGACGGGTTGTCAGCCGAGTACATT
TCCACGCAGCTCTCGCTGTTTCGGAGCGGGGTCCGCAAAGGCTCCGTCTACAGTGAAATCATGATGCCGATCGCGGAGCG
GCTGAGCGAGCAGCAGATTCGGGATCTTGCGGCCTATTTCGCCTCGCGCGCAGGGGGAACAGGGGGTGAAGCTTCAGCCG
GGCCGGAGGCGCGGCAATGA

Upstream 100 bases:

>100_bases
CCTGCCCGCTCGTCTATGTGCTGGCGGGAATCATGATCTCGGCGCGGTGGCTGAAGGAGATCGAGGCTCGCACACCCTCC
TATCAGCCCGACGGGAACGG

Downstream 100 bases:

>100_bases
GGCGCGGCGCGGGGCGGGTGGTTCTTCTGTCAATTGCCTCGGCGCTTTCGGGTTGCTCGGGCGTGCAGTCGGCGCTTTCA
CCGAGCGGCGTGGAGGCGCT

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MIMRRLDRGWWRAVGLGAVLALAGAGLLGGVFILSGLYNVAASRQHFDITNMLIRLTLTRSVATRSMGVDVPDLSDERLA
ALGARHFDLGCAPCHASPGTEQNPIAAEMYPAPPPLTHAAEDWDAAELFWIVKHGLKFTGMPSWPALEREDEIWALVAFL
ERLPESGAQDYAALAGRRSGTGEVEFTFGGQNATETLCANCHGDENNPPVHHLAPGIAGQKAPYLLRALEEYASGERESG
MMEPIAAALAPEEIEQLARHYAEERVLPSAAGVDMEAAARGAEIARNGARADDIPACLSCHGANTSGQFPRLDGLSAEYI
STQLSLFRSGVRKGSVYSEIMMPIAERLSEQQIRDLAAYFASRAGGTGGEASAGPEARQ

Sequences:

>Translated_379_residues
MIMRRLDRGWWRAVGLGAVLALAGAGLLGGVFILSGLYNVAASRQHFDITNMLIRLTLTRSVATRSMGVDVPDLSDERLA
ALGARHFDLGCAPCHASPGTEQNPIAAEMYPAPPPLTHAAEDWDAAELFWIVKHGLKFTGMPSWPALEREDEIWALVAFL
ERLPESGAQDYAALAGRRSGTGEVEFTFGGQNATETLCANCHGDENNPPVHHLAPGIAGQKAPYLLRALEEYASGERESG
MMEPIAAALAPEEIEQLARHYAEERVLPSAAGVDMEAAARGAEIARNGARADDIPACLSCHGANTSGQFPRLDGLSAEYI
STQLSLFRSGVRKGSVYSEIMMPIAERLSEQQIRDLAAYFASRAGGTGGEASAGPEARQ
>Mature_379_residues
MIMRRLDRGWWRAVGLGAVLALAGAGLLGGVFILSGLYNVAASRQHFDITNMLIRLTLTRSVATRSMGVDVPDLSDERLA
ALGARHFDLGCAPCHASPGTEQNPIAAEMYPAPPPLTHAAEDWDAAELFWIVKHGLKFTGMPSWPALEREDEIWALVAFL
ERLPESGAQDYAALAGRRSGTGEVEFTFGGQNATETLCANCHGDENNPPVHHLAPGIAGQKAPYLLRALEEYASGERESG
MMEPIAAALAPEEIEQLARHYAEERVLPSAAGVDMEAAARGAEIARNGARADDIPACLSCHGANTSGQFPRLDGLSAEYI
STQLSLFRSGVRKGSVYSEIMMPIAERLSEQQIRDLAAYFASRAGGTGGEASAGPEARQ

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 40537; Mature: 40537

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMRRLDRGWWRAVGLGAVLALAGAGLLGGVFILSGLYNVAASRQHFDITNMLIRLTLTR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SVATRSMGVDVPDLSDERLAALGARHFDLGCAPCHASPGTEQNPIAAEMYPAPPPLTHAA
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
EDWDAAELFWIVKHGLKFTGMPSWPALEREDEIWALVAFLERLPESGAQDYAALAGRRSG
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
TGEVEFTFGGQNATETLCANCHGDENNPPVHHLAPGIAGQKAPYLLRALEEYASGERESG
CCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
MMEPIAAALAPEEIEQLARHYAEERVLPSAAGVDMEAAARGAEIARNGARADDIPACLSC
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHC
HGANTSGQFPRLDGLSAEYISTQLSLFRSGVRKGSVYSEIMMPIAERLSEQQIRDLAAYF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRAGGTGGEASAGPEARQ
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIMRRLDRGWWRAVGLGAVLALAGAGLLGGVFILSGLYNVAASRQHFDITNMLIRLTLTR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SVATRSMGVDVPDLSDERLAALGARHFDLGCAPCHASPGTEQNPIAAEMYPAPPPLTHAA
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
EDWDAAELFWIVKHGLKFTGMPSWPALEREDEIWALVAFLERLPESGAQDYAALAGRRSG
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCC
TGEVEFTFGGQNATETLCANCHGDENNPPVHHLAPGIAGQKAPYLLRALEEYASGERESG
CCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
MMEPIAAALAPEEIEQLARHYAEERVLPSAAGVDMEAAARGAEIARNGARADDIPACLSC
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHC
HGANTSGQFPRLDGLSAEYISTQLSLFRSGVRKGSVYSEIMMPIAERLSEQQIRDLAAYF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRAGGTGGEASAGPEARQ
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]