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The map label for this gene is hspD [H]

Identifier: 110635080

GI number: 110635080

Start: 2992519

End: 2993025

Strand: Reverse

Name: hspD [H]

Synonym: Meso_2746

Alternate gene names: 110635080

Gene position: 2993025-2992519 (Counterclockwise)

Preceding gene: 110635082

Following gene: 110635078

Centisome position: 67.83

GC content: 57.79

Gene sequence:

>507_bases
ATGGCCAAAACGCAAACTTGTTGCTCAACAGGAGGACAGACCATGCGTCATGTCGATTTCTCTCCCCTTTACCGATCGAC
CGTAGGGTTCGACCGGCTTTTCACGATGCTCGACTCGCTTGGCCAGCTCGAGGGCGGTCAGACCTACCCGCCCTACAATA
TCGAGCGCACGGGCGATGACGCCTATCGCATCTCGATGGCTGTTGCGGGCTTCTCCGAGGACGATATCTCGGTCGAAGCG
CATCGCAACGTGCTGACCATCAAGGGCGAGAAGCTCGAGGAGAATAAGGAAACGAACGAATTTCTGTATCGCGGCATTGC
CTCTCGCAGCTTCGAGCGGCGCTTCCAGCTTGCGGACCATGTGGAAGTTGCTGGTGCCGTACTTAAGGACGGCCTGCTCC
ATGTGGACCTTGTCCGCAACATTCCCGAGGAAATGAAGCCGCGCCGCATCCCGATTGCGCGGGCTGCCAAGGAAGCAAAG
CAGATCGAGGCAAAGAACGCCGCGTAA

Upstream 100 bases:

>100_bases
TCGGCCTTGAATTAATGCGCCGAAACCACCAGATTCTTGGTGCGGCTGCCGATGAAGGAGCCGTTGGCCGGATGGAAACG
CCCTTTGCGGGTTTCCGGTG

Downstream 100 bases:

>100_bases
GGCAGATTCTTGCAAGCTTATGGCGGCGCCTTCGGGCGCCGCTTTTCTTTTGGCCTTACGTCACCTGTGCAGCAGCCCTC
CAAAGGCGTCGACCTCCTCC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MAKTQTCCSTGGQTMRHVDFSPLYRSTVGFDRLFTMLDSLGQLEGGQTYPPYNIERTGDDAYRISMAVAGFSEDDISVEA
HRNVLTIKGEKLEENKETNEFLYRGIASRSFERRFQLADHVEVAGAVLKDGLLHVDLVRNIPEEMKPRRIPIARAAKEAK
QIEAKNAA

Sequences:

>Translated_168_residues
MAKTQTCCSTGGQTMRHVDFSPLYRSTVGFDRLFTMLDSLGQLEGGQTYPPYNIERTGDDAYRISMAVAGFSEDDISVEA
HRNVLTIKGEKLEENKETNEFLYRGIASRSFERRFQLADHVEVAGAVLKDGLLHVDLVRNIPEEMKPRRIPIARAAKEAK
QIEAKNAA
>Mature_167_residues
AKTQTCCSTGGQTMRHVDFSPLYRSTVGFDRLFTMLDSLGQLEGGQTYPPYNIERTGDDAYRISMAVAGFSEDDISVEAH
RNVLTIKGEKLEENKETNEFLYRGIASRSFERRFQLADHVEVAGAVLKDGLLHVDLVRNIPEEMKPRRIPIARAAKEAKQ
IEAKNAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=138, Percent_Identity=52.1739130434783, Blast_Score=148, Evalue=2e-37,
Organism=Escherichia coli, GI87082316, Length=139, Percent_Identity=41.726618705036, Blast_Score=127, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18837; Mature: 18705

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTQTCCSTGGQTMRHVDFSPLYRSTVGFDRLFTMLDSLGQLEGGQTYPPYNIERTGDD
CCCCHHHHHCCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC
AYRISMAVAGFSEDDISVEAHRNVLTIKGEKLEENKETNEFLYRGIASRSFERRFQLADH
CEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VEVAGAVLKDGLLHVDLVRNIPEEMKPRRIPIARAAKEAKQIEAKNAA
HHHHHHHHHCCCEEHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKTQTCCSTGGQTMRHVDFSPLYRSTVGFDRLFTMLDSLGQLEGGQTYPPYNIERTGDD
CCCHHHHHCCCCEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC
AYRISMAVAGFSEDDISVEAHRNVLTIKGEKLEENKETNEFLYRGIASRSFERRFQLADH
CEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VEVAGAVLKDGLLHVDLVRNIPEEMKPRRIPIARAAKEAKQIEAKNAA
HHHHHHHHHCCCEEHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]