| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is alkK [H]
Identifier: 110634877
GI number: 110634877
Start: 2715762
End: 2717438
Strand: Reverse
Name: alkK [H]
Synonym: Meso_2536
Alternate gene names: 110634877
Gene position: 2717438-2715762 (Counterclockwise)
Preceding gene: 110634878
Following gene: 110634876
Centisome position: 61.59
GC content: 59.39
Gene sequence:
>1677_bases ATGGATAAGTACGACGATGGATTGCCGCGTTGCGCGGCCAATTATCAACCCATGACGCCCATCAGCTTTCTGGAGCGGGC GGCACTGACCTATCCTGACCATCCGGCCGTCATCCATGGCAGCACCAGGATCACCTATCGCGAGTTCTGGGAAAACTGCC GCCGGTTGGCATCGGCCTTGGTCAGGCTCGGTATCAGGCGGGGCGACACCGTGTCGGTGCTGCTTTCCAATACGCCGCCG ATGATCGAAGCGCATTACGGCGTCCCGATGGCGAACGGCGCCGTGCTGCATTCGCTGAACTACCGTCTAGATGCGCAGGC GATCGCCTTCCAGCTCGAGCATTCGGAAAGCAAGGTGCTGATCGTCGATCGCGAGTTCTCCAGCCTTGCGTCGGACGCGC TTGCCTTGCTGAAGAATTCACCGATCGTGATCGACTATGACGATCCCGAATATCCGGACGATGCTCCGTATCCGAAAGGG CCATTTATCGGCTCTCTGGAATATGCCGCGTTCCTGCGTAGCGGCAATCCGGATTTCCTGCCTCCTCCTCCCAGGGACGA ATGGGACGCCATCTCACTCAACTACACCTCGGGCACGACCGGCAATCCAAAGGGAGTCGTATGCCACCATCGCGGCGCAG CGCTCATGGCGTTGAACAAGACGATCCATGGCGAGATGGGAAAGCATCCGGTCTATTTGTGGACTTTGCCCCTGTTCCAC TGCAACGGCTGGAGTTTTTCCTGGACCGTCGCGGTTCAGGCGGGAACCCATGTCTGCCTGCGTTGGGTTCGGGCACGCGT CGTCTATGATTTGATCGCGGACCATGGCGTGACGCATCTTTGCGGCGCTCCGATCGTCATGTCCACTTTGCTGAATGCCC CCGACGAGGATAAGCGCCGCTTCTCCCACGAGGCGATCTTCATCACGGCTGCCGCGCCTCCGCCGGAGGCTGTGCTGGCT GCGATGCGCGACGCCGGATTTCGCGTCCTGCACCTCTATGGGCTGACCGAGACCTATGGCCCCGCCATGGTCAATGAATG GAAAGCGGAGTGGGATGCCCTTCCGCCAGCCGAGCAGGCAGCCCACAAGGCGCGCCAAGGCGTACGCTATCTTTCCCTAT CGGAAGTTGCCGTTCTGGATTCGGAGACGATGCAGCCGGTTCCCGCCGATGGCGAGACCATGGGCGAGGTCATGATGCGC GGCAACGTGGTGATGAAGGGCTATCTGAAAAATCAGAAGGCGACCGAAGAGGCATTCTCAGGCGGCTGGTTCCATACCGG CGATCTCGGCGTGATGCACCCCGACGGCTATGTTCAGCTCAAGGACCGCTCAAAAGACATCATCATTTCGGGTGGCGAGA ACATCTCTTCCATAGAAGTGGAGGATGCCCTGTATCGTCATCCCAAGGTTATGCAGTGCGCCGTAGTCGCCATGCCCGAT GAGAAATGGGGGGAGCGGCCGGTGGCATTCGTCGAACTTCGCCCGAATGTTCATGCAGATGAAGCAGAAATCCTTTCCTA TTGCAAAGCGACGCTCGCTCGCTTCAAGTGCCCCTCGAGGATCATCTTCGAGACCTTGCCCAAGACTTCTACCGGCAAGA TACAGAAGTTCGCGCTGCGCGCCCGAGCCAAGCAACTGGCAGCGGATCTCGCCTTCCAAAGGCAAGGCGAGGCGTGA
Upstream 100 bases:
>100_bases GTGGCGGCTTTGGAGACTGGAAGCGCGCCGGGTATCCGGTTGCCCAGAAGACCAAGCAGGGTTGAGCGCGCAGATATCTC CAGTCCAGCGAGGATGACGG
Downstream 100 bases:
>100_bases TATGGGAGGTCAGTGCATGCATTCGGGAAGCTGACAAAATCAATTCCTTATCGAGAAGGTATTCACATGAGTGAAACCGC CGGAGACCTGCCTCTTCAGC
Product: acyl-CoA synthetase
Products: AMP; diphosphate +an acyl-CoA [C]
Alternate protein names: Medium-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 558; Mature: 558
Protein sequence:
>558_residues MDKYDDGLPRCAANYQPMTPISFLERAALTYPDHPAVIHGSTRITYREFWENCRRLASALVRLGIRRGDTVSVLLSNTPP MIEAHYGVPMANGAVLHSLNYRLDAQAIAFQLEHSESKVLIVDREFSSLASDALALLKNSPIVIDYDDPEYPDDAPYPKG PFIGSLEYAAFLRSGNPDFLPPPPRDEWDAISLNYTSGTTGNPKGVVCHHRGAALMALNKTIHGEMGKHPVYLWTLPLFH CNGWSFSWTVAVQAGTHVCLRWVRARVVYDLIADHGVTHLCGAPIVMSTLLNAPDEDKRRFSHEAIFITAAAPPPEAVLA AMRDAGFRVLHLYGLTETYGPAMVNEWKAEWDALPPAEQAAHKARQGVRYLSLSEVAVLDSETMQPVPADGETMGEVMMR GNVVMKGYLKNQKATEEAFSGGWFHTGDLGVMHPDGYVQLKDRSKDIIISGGENISSIEVEDALYRHPKVMQCAVVAMPD EKWGERPVAFVELRPNVHADEAEILSYCKATLARFKCPSRIIFETLPKTSTGKIQKFALRARAKQLAADLAFQRQGEA
Sequences:
>Translated_558_residues MDKYDDGLPRCAANYQPMTPISFLERAALTYPDHPAVIHGSTRITYREFWENCRRLASALVRLGIRRGDTVSVLLSNTPP MIEAHYGVPMANGAVLHSLNYRLDAQAIAFQLEHSESKVLIVDREFSSLASDALALLKNSPIVIDYDDPEYPDDAPYPKG PFIGSLEYAAFLRSGNPDFLPPPPRDEWDAISLNYTSGTTGNPKGVVCHHRGAALMALNKTIHGEMGKHPVYLWTLPLFH CNGWSFSWTVAVQAGTHVCLRWVRARVVYDLIADHGVTHLCGAPIVMSTLLNAPDEDKRRFSHEAIFITAAAPPPEAVLA AMRDAGFRVLHLYGLTETYGPAMVNEWKAEWDALPPAEQAAHKARQGVRYLSLSEVAVLDSETMQPVPADGETMGEVMMR GNVVMKGYLKNQKATEEAFSGGWFHTGDLGVMHPDGYVQLKDRSKDIIISGGENISSIEVEDALYRHPKVMQCAVVAMPD EKWGERPVAFVELRPNVHADEAEILSYCKATLARFKCPSRIIFETLPKTSTGKIQKFALRARAKQLAADLAFQRQGEA >Mature_558_residues MDKYDDGLPRCAANYQPMTPISFLERAALTYPDHPAVIHGSTRITYREFWENCRRLASALVRLGIRRGDTVSVLLSNTPP MIEAHYGVPMANGAVLHSLNYRLDAQAIAFQLEHSESKVLIVDREFSSLASDALALLKNSPIVIDYDDPEYPDDAPYPKG PFIGSLEYAAFLRSGNPDFLPPPPRDEWDAISLNYTSGTTGNPKGVVCHHRGAALMALNKTIHGEMGKHPVYLWTLPLFH CNGWSFSWTVAVQAGTHVCLRWVRARVVYDLIADHGVTHLCGAPIVMSTLLNAPDEDKRRFSHEAIFITAAAPPPEAVLA AMRDAGFRVLHLYGLTETYGPAMVNEWKAEWDALPPAEQAAHKARQGVRYLSLSEVAVLDSETMQPVPADGETMGEVMMR GNVVMKGYLKNQKATEEAFSGGWFHTGDLGVMHPDGYVQLKDRSKDIIISGGENISSIEVEDALYRHPKVMQCAVVAMPD EKWGERPVAFVELRPNVHADEAEILSYCKATLARFKCPSRIIFETLPKTSTGKIQKFALRARAKQLAADLAFQRQGEA
Specific function: Esterification, Concomitant With Transport, Of Exogenous Long-Chain Fatty Acids Into Metabolically Active CoA Thioesters For Subsequent Degradation Or Incorporation Into Phospholipids. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=564, Percent_Identity=28.9007092198582, Blast_Score=184, Evalue=3e-46, Organism=Homo sapiens, GI187761345, Length=547, Percent_Identity=27.2394881170018, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI187761343, Length=547, Percent_Identity=27.2394881170018, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI157311624, Length=529, Percent_Identity=26.4650283553875, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI157311622, Length=529, Percent_Identity=26.4650283553875, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI58082049, Length=529, Percent_Identity=26.0869565217391, Blast_Score=116, Evalue=7e-26, Organism=Homo sapiens, GI122937307, Length=546, Percent_Identity=25.2747252747253, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI13375727, Length=562, Percent_Identity=25.2669039145907, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI115511026, Length=523, Percent_Identity=24.6653919694073, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI42544132, Length=520, Percent_Identity=23.6538461538462, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI38505220, Length=527, Percent_Identity=24.6679316888046, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI28416953, Length=561, Percent_Identity=22.9946524064171, Blast_Score=96, Evalue=9e-20, Organism=Homo sapiens, GI42794756, Length=357, Percent_Identity=25.2100840336134, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI42794760, Length=357, Percent_Identity=25.2100840336134, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI42794758, Length=357, Percent_Identity=25.2100840336134, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI40807491, Length=176, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI57165410, Length=176, Percent_Identity=32.3863636363636, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI57165412, Length=176, Percent_Identity=32.3863636363636, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI12669909, Length=180, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI4758332, Length=180, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1788107, Length=567, Percent_Identity=26.2786596119929, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI221142682, Length=514, Percent_Identity=26.0700389105058, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI145693145, Length=351, Percent_Identity=33.048433048433, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1786810, Length=542, Percent_Identity=27.6752767527675, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1790505, Length=596, Percent_Identity=24.6644295302013, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1788595, Length=352, Percent_Identity=28.6931818181818, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786529, Length=543, Percent_Identity=23.2044198895028, Blast_Score=72, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71994694, Length=562, Percent_Identity=27.0462633451957, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI71994690, Length=562, Percent_Identity=27.0462633451957, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI71994703, Length=562, Percent_Identity=27.0462633451957, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17560308, Length=542, Percent_Identity=27.3062730627306, Blast_Score=148, Evalue=7e-36, Organism=Caenorhabditis elegans, GI32563687, Length=528, Percent_Identity=26.7045454545455, Blast_Score=146, Evalue=3e-35, Organism=Caenorhabditis elegans, GI17558820, Length=527, Percent_Identity=27.7039848197343, Blast_Score=145, Evalue=5e-35, Organism=Caenorhabditis elegans, GI17559526, Length=518, Percent_Identity=25.6756756756757, Blast_Score=133, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17538037, Length=529, Percent_Identity=26.4650283553875, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17557194, Length=542, Percent_Identity=25.830258302583, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17560140, Length=529, Percent_Identity=23.8185255198488, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71996755, Length=541, Percent_Identity=25.1386321626617, Blast_Score=115, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17531443, Length=535, Percent_Identity=22.4299065420561, Blast_Score=105, Evalue=5e-23, Organism=Caenorhabditis elegans, GI71985884, Length=363, Percent_Identity=25.6198347107438, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17510401, Length=173, Percent_Identity=31.2138728323699, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=555, Percent_Identity=26.8468468468468, Blast_Score=135, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6319264, Length=579, Percent_Identity=23.8341968911917, Blast_Score=93, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6323182, Length=146, Percent_Identity=29.4520547945205, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581924, Length=562, Percent_Identity=27.2241992882562, Blast_Score=142, Evalue=7e-34, Organism=Drosophila melanogaster, GI21355181, Length=540, Percent_Identity=24.4444444444444, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI18859661, Length=532, Percent_Identity=25.187969924812, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI17933690, Length=564, Percent_Identity=22.8723404255319, Blast_Score=96, Evalue=9e-20, Organism=Drosophila melanogaster, GI19922652, Length=492, Percent_Identity=23.9837398373984, Blast_Score=91, Evalue=3e-18, Organism=Drosophila melanogaster, GI24648253, Length=523, Percent_Identity=22.7533460803059, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI24648255, Length=523, Percent_Identity=22.7533460803059, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24648260, Length=512, Percent_Identity=23.046875, Blast_Score=83, Evalue=6e-16, Organism=Drosophila melanogaster, GI24648257, Length=516, Percent_Identity=22.4806201550388, Blast_Score=82, Evalue=9e-16, Organism=Drosophila melanogaster, GI281365686, Length=492, Percent_Identity=21.5447154471545, Blast_Score=73, Evalue=6e-13, Organism=Drosophila melanogaster, GI24583465, Length=468, Percent_Identity=22.8632478632479, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24583463, Length=468, Percent_Identity=22.8632478632479, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364798, Length=468, Percent_Identity=22.8632478632479, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI19921316, Length=164, Percent_Identity=30.4878048780488, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.3 [C]
Molecular weight: Translated: 61808; Mature: 61808
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKYDDGLPRCAANYQPMTPISFLERAALTYPDHPAVIHGSTRITYREFWENCRRLASAL CCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHH VRLGIRRGDTVSVLLSNTPPMIEAHYGVPMANGAVLHSLNYRLDAQAIAFQLEHSESKVL HHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEECCCEECCEEEEEEEECCCCEEE IVDREFSSLASDALALLKNSPIVIDYDDPEYPDDAPYPKGPFIGSLEYAAFLRSGNPDFL EEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC PPPPRDEWDAISLNYTSGTTGNPKGVVCHHRGAALMALNKTIHGEMGKHPVYLWTLPLFH CCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEECHHHCCCCCCCCEEEEEEEEEE CNGWSFSWTVAVQAGTHVCLRWVRARVVYDLIADHGVTHLCGAPIVMSTLLNAPDEDKRR ECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCHHHHH FSHEAIFITAAAPPPEAVLAAMRDAGFRVLHLYGLTETYGPAMVNEWKAEWDALPPAEQA CCCCEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHH AHKARQGVRYLSLSEVAVLDSETMQPVPADGETMGEVMMRGNVVMKGYLKNQKATEEAFS HHHHHCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHC GGWFHTGDLGVMHPDGYVQLKDRSKDIIISGGENISSIEVEDALYRHPKVMQCAVVAMPD CCCEEECCEEEECCCCEEEEECCCCEEEEECCCCCCEEEHHHHHHCCCCEEEEEEEECCC EKWGERPVAFVELRPNVHADEAEILSYCKATLARFKCPSRIIFETLPKTSTGKIQKFALR HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH ARAKQLAADLAFQRQGEA HHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDKYDDGLPRCAANYQPMTPISFLERAALTYPDHPAVIHGSTRITYREFWENCRRLASAL CCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCEEEECCCEEEHHHHHHHHHHHHHHH VRLGIRRGDTVSVLLSNTPPMIEAHYGVPMANGAVLHSLNYRLDAQAIAFQLEHSESKVL HHHHCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEECCCEECCEEEEEEEECCCCEEE IVDREFSSLASDALALLKNSPIVIDYDDPEYPDDAPYPKGPFIGSLEYAAFLRSGNPDFL EEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC PPPPRDEWDAISLNYTSGTTGNPKGVVCHHRGAALMALNKTIHGEMGKHPVYLWTLPLFH CCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCEEEEECHHHCCCCCCCCEEEEEEEEEE CNGWSFSWTVAVQAGTHVCLRWVRARVVYDLIADHGVTHLCGAPIVMSTLLNAPDEDKRR ECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCHHHHH FSHEAIFITAAAPPPEAVLAAMRDAGFRVLHLYGLTETYGPAMVNEWKAEWDALPPAEQA CCCCEEEEEECCCCHHHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHH AHKARQGVRYLSLSEVAVLDSETMQPVPADGETMGEVMMRGNVVMKGYLKNQKATEEAFS HHHHHCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHC GGWFHTGDLGVMHPDGYVQLKDRSKDIIISGGENISSIEVEDALYRHPKVMQCAVVAMPD CCCEEECCEEEECCCCEEEEECCCCEEEEECCCCCCEEEHHHHHHCCCCEEEEEEEECCC EKWGERPVAFVELRPNVHADEAEILSYCKATLARFKCPSRIIFETLPKTSTGKIQKFALR HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH ARAKQLAADLAFQRQGEA HHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Salts [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): 0.0408 {octanoate}} 0.0125 {octanoate}} 0.0059 {octanoate}} 0.00072 {octanoate}} 0.0013 {undecanoate}} 0.0022 {pentadecanoate}} 0.053 {CoA}} 0.035 {CoA}} 0.034 {CoA}} 0.0034 {tridecanoate}} 0.002 {laurate}} 0.0019 {laurate}} 0.0
Substrates: ATP; a long-chain carboxylic acid; CoA [C]
Specific reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate +an acyl-CoA [C]
General reaction: Acid-thiol ligation; Phosphorylation [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1453953 [H]